upd imports

vmikk · vmikk · commit f0199fb802d6 · 2025-12-10T15:57:22.000+02:00
diff --git a/workflows/STEP1.nf b/workflows/STEP1.nf
@@ -17,7 +17,7 @@ include { dumpParamsTsv }             from '../modules/dump_parameters.nf'
 include { CHIMERA_REMOVAL }           from '../subworkflows/chimera_removal_subworkflow.nf'
 
 if ( params.seqplatform == "Illumina" ){
-  include { demux_illumina_notmerged; trim_primers_pe; join_pe } from '../modules/Illumina_pe.nf'
+  include { qc_pe; demux_illumina_notmerged; trim_primers_pe; join_pe } from '../modules/Illumina_pe.nf'
 }
 
 

Original file line number	Diff line number	Diff line change
`@@ -17,7 +17,7 @@ include { dumpParamsTsv } from '../modules/dump_parameters.nf'`
`17`	`17`	`include { CHIMERA_REMOVAL } from '../subworkflows/chimera_removal_subworkflow.nf'`
`18`	`18`
`19`	`19`	`if ( params.seqplatform == "Illumina" ){`
`20`		`- include { demux_illumina_notmerged; trim_primers_pe; join_pe } from '../modules/Illumina_pe.nf'`
	`20`	`+ include { qc_pe; demux_illumina_notmerged; trim_primers_pe; join_pe } from '../modules/Illumina_pe.nf'`
`21`	`21`	`}`
`22`	`22`
`23`	`23`