imageTCGAutils/DESCRIPTION at devel · waldronlab/imageTCGAutils · GitHub

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Package: imageTCGAutils
Title: Utility functions for working with histopathology images
Version: 0.99.24
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu",
        "aut", c(ORCID = "0000-0002-3242-0582", affiliation =
            "CUNY Graduate School of Public Health and Health Policy,
            New York, NY USA")),
    person("Ilaria", "Billato", , "ilaria.billato@phd.unipd.it",
        c("aut", "cre"), c(ORCID = "0000-0002-3335-3254",
        affiliation = "Department of Biology, University of Padova")
    ),
    person("Eslam", "Abousamra", role = "ctb", comment = c(
        affiliation = "CUNY Graduate School of Public Health and Health Policy,
        New York, NY USA")
    ))
Description: Utility functions for working with CONCH data, listing remote
    files. One function assigns HoverNet nuclei to ProvGigaPath tiles with
    a scale factor to align coordinates. Provides internal utility functions
    for 'imageFeatureTCGA' and most functions are not meant for end users.
Depends:
    R (>= 4.5.0)
Imports:
    BiocBaseUtils,
    data.table,
    dplyr,
    grDevices,
    methods,
    rlang,
    S4Vectors,
    SpatialExperiment,
    SummarizedExperiment
Suggests:
    anndataR,
    BiocStyle,
    imageFeatureTCGA,
    ggplot2,
    knitr,
    paws,
    rhdf5,
    rmarkdown,
    sfdep,
    spdep,
    SpatialFeatureExperiment,
    tinytest
biocViews: Software, WorkflowStep, Preprocessing
License: Artistic-2.0
BugReports: https://github.com/waldronlab/imageTCGAutils/issues
URL: https://github.com/waldronlab/imageTCGAutils
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr