Merge branch 'master' into fix-alpha-mode-near-unity

Author: waltsims

CLAUDE.md

@@ -83,8 +83,9 @@ When `pml_inside=False` (default), `kspaceFirstOrder()` expands the grid by `2*p
 
 - Tests in `tests/`, configured via `[tool.pytest.ini_options]` in `pyproject.toml`
 - Integration tests (`@pytest.mark.integration`) compare against MATLAB reference data
-- Test fixtures in `tests/integration/conftest.py`: `load_matlab_ref`, `assert_fields_close`
-- MATLAB reference data pointed to by `KWAVE_MATLAB_REF_DIR` env var
+- Test fixtures in `tests/integration/conftest.py`: `load_matlab_ref` (fixture), `assert_fields_close` (helper function for field comparison)
+- MATLAB reference data for `@pytest.mark.integration` tests lives in `tests/matlab_test_data_collectors/python_testers/collectedValues/` (hardcoded in `conftest.py`)
+- `test_example_parity.py` (MATLAB-parity tests) reads `KWAVE_MATLAB_REF_DIR` (defaults to `~/git/k-wave-cupy/tests` if unset)
 
 ## Naming Conventions
 

pyproject.toml

@@ -31,7 +31,7 @@ dependencies = [
     "numpy>=1.22.2,<2.3.0",
     "matplotlib==3.10.7",
     "beartype==0.22.9",
-    "jaxtyping==0.3.2",
+    "jaxtyping==0.3.7",
     "deprecated>=1.2.14",
     "tqdm>=4.60"
 ]
@@ -48,7 +48,7 @@ test = ["pytest",
         "coverage==7.10.6",
         "phantominator",
         "testfixtures==8.3.0",
-        "requests==2.33.0"]
+        "requests==2.33.1"]
 example = ["gdown==5.2.0"]
 docs = [ "sphinx-mdinclude==0.6.2",
     "sphinx-copybutton==0.5.2",