Fixes imports

Author: tainagdcoleman

wfcommons/wfchef/duplicate.py

@@ -93,7 +93,7 @@ def duplicate(path: pathlib.Path,
         raise ValueError(f"Cannot create synthentic graph with {num_nodes} nodes from base graph with {graph.order()} nodes")
 
     all_microstructures = json.loads(base_path.joinpath("microstructures.json").read_text())
-    microstructures, freqs = zip(*[(ms, ms["freq"]) for ms_hash, ms in all_microstructures.items()])
+    microstructures, freqs = map(list, zip(*[(ms, ms["frequency"]) for ms_hash, ms in all_microstructures.items()]))
 
     p: List[float] = (np.array(freqs) / np.sum(freqs)).tolist()
     while graph.order() < num_nodes and microstructures:

wfcommons/wfchef/recipes/blast/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/bwa/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/cycles/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/epigenomics/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/genome/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/montage/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/seismology/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/soykb/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle

wfcommons/wfchef/recipes/srasearch/recipe.py

@@ -13,7 +13,7 @@
 from wfcommons.generator.workflow.abstract_recipe import WorkflowRecipe
 from wfcommons.common.workflow import Workflow
 
-from wfchef.duplicate import duplicate
+from wfcommons.wfchef.duplicate import duplicate
 
 import pathlib 
 import pickle