Simplified CWL translator a tiny bit now that the duplicate-file bug

has been fixed in Streamflow

Author: henricasanova

tests/translators_loggers/Dockerfile.streamflow

@@ -41,7 +41,9 @@ RUN apt-get -y install stress-ng
 
 # Streamflow
 RUN apt-get -y install nodejs
-RUN python3 -m pip install --break-system-packages streamflow==0.2.0.dev14
+#RUN python3 -m pip install --break-system-packages streamflow==0.2.0.dev15
+# For now, the above hasnt' been released yet, so we get a commit tag
+RUN git clone https://github.com/alpha-unito/streamflow.git && cd streamflow && git checkout 2295eda80ad37214d6f607f75f542b9eca03e121 && python3 -m pip install --break-system-packages . 
 
 # Add wfcommons user
 RUN useradd -ms /bin/bash wfcommons

wfcommons/wfbench/translator/templates/cwl/shell.cwl

@@ -15,8 +15,6 @@ arguments:
           }
         }
         cmd = cmd + " > " + runtime.outdir + "/" + inputs.step_name + ".out 2> " + runtime.outdir + "/" + inputs.step_name + ".err";
-        cmd = cmd + " ; echo '-- end of stdout for " + inputs.step_name + " --' >> " + runtime.outdir + "/" + inputs.step_name + ".out";
-        cmd = cmd + " ; echo '-- end of stderr for " + inputs.step_name + " --' >> " + runtime.outdir + "/" + inputs.step_name + ".err";
         return cmd;
       }
     shellQuote: false