Update citedin in frontmatter .md files

actions-user · actions-user · commit 4af7094278f8 · 2026-04-05T09:25:27.000Z
diff --git a/_pathways/WP138.md b/_pathways/WP138.md
@@ -51,6 +51,9 @@ citedin:
   title: Transcriptome analysis of newly established carboplatin-resistant ovarian
     cancer cell model reveals genes shared by drug resistance and drug-induced EMT
     (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - ONTOX
 description: 'Androgens, mainly testosterone and 5alpha-dihydrotestosterone (DHT)
diff --git a/_pathways/WP1530.md b/_pathways/WP1530.md
@@ -37,6 +37,9 @@ citedin:
   title: Long Term Culture of the A549 Cancer Cell Line Promotes Multilamellar Body
     Formation and Differentiation towards an Alveolar Type II Pneumocyte Phenotype
     (2016)
+- link: PMC7913660
+  title: A Meta-Analysis of the Effects of High-LET Ionizing Radiations in Human Gene
+    Expression (2021)
 communities:
 - ExRNA
 description: 'This is the first of two pathways which deals with the DNA damage response.
diff --git a/_pathways/WP1545.md b/_pathways/WP1545.md
@@ -28,6 +28,9 @@ citedin:
 - link: PMC12448840
   title: 'GNNenrich: a novel method for pathway enrichment analysis based on graph
     neural network (2025)'
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 communities:
 - ExRNA
 description: MicroRNA clusters involved in de DNA damage response. Genes they regulated
diff --git a/_pathways/WP179.md b/_pathways/WP179.md
@@ -84,6 +84,9 @@ citedin:
   title: Genes whose expressions in the primary lung squamous cell carcinoma are able
     to accurately predict the progression of metastasis through lymphatic system,
     inferred from a bioinformatics analyses (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - CPTAC
 - ONTOX
diff --git a/_pathways/WP185.md b/_pathways/WP185.md
@@ -28,6 +28,9 @@ citedin:
 - link: PMC4065073
   title: Proteomics analysis of the non-muscle myosin heavy chain IIa-enriched actin-myosin
     complex reveals multiple functions within the podocyte (2014)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - CPTAC
 - ONTOX
diff --git a/_pathways/WP1984.md b/_pathways/WP1984.md
@@ -48,6 +48,9 @@ citedin:
   title: Transcriptome analysis of newly established carboplatin-resistant ovarian
     cancer cell model reveals genes shared by drug resistance and drug-induced EMT
     (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities: []
 description: This pathway incorporates the most important proteins for breast cancer.
   The Rp score from the Connectivity-Maps (C-Maps) webserver was used to determine
diff --git a/_pathways/WP1991.md b/_pathways/WP1991.md
@@ -31,6 +31,9 @@ citedin:
 - link: PMC12223304
   title: 'Causal role of immunophenotypes in HIV-1 acquisition: insights from Mendelian
     randomization analysis (2025)'
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 communities:
 - ExRNA
 description: Smooth muscle cells exhibit a unique plasticity, in that they are able
diff --git a/_pathways/WP2075.md b/_pathways/WP2075.md
@@ -28,6 +28,9 @@ citedin:
 - link: PMC12424221
   title: Stabilizing the retromer complex rescues synaptic dysfunction and endosomal
     trafficking deficits in an Alzheimer's disease mouse model (2025)
+- link: PMC8595495
+  title: Thyroarytenoid muscle gene expression in a rat model of early-onset Parkinson’s
+    disease (2021)
 description: 'This pathway displays current genes, proteolytic events and other processes
   associated with the progression of Alzheimer''s disease. This pathway was adapted
   from KEGG on 10/7/2011. Note: mitochondrial associated genes Cx I through Cx V are
diff --git a/_pathways/WP2249.md b/_pathways/WP2249.md
@@ -20,6 +20,9 @@ citedin:
 - link: PMC4553261
   title: Integration of extracellular RNA profiling data using metadata, biomedical
     ontologies and Linked Data technologies (2015)
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 communities:
 - CPTAC
 - Diseases
diff --git a/_pathways/WP231.md b/_pathways/WP231.md
@@ -44,6 +44,9 @@ citedin:
 - link: PMC12048486
   title: Single-cell profiling unveils a geroprotective role of Procyanidin C1 in
     hematopoietic immune system via senolytic and senomorphic effects (2025)
+- link: PMC7913660
+  title: A Meta-Analysis of the Effects of High-LET Ionizing Radiations in Human Gene
+    Expression (2021)
 communities:
 - ONTOX
 description: Tumor necrosis factor alpha (TNFα) is a proinflammatory cytokine involved
diff --git a/_pathways/WP2361.md b/_pathways/WP2361.md
@@ -54,6 +54,9 @@ citedin:
   title: Genes whose expressions in the primary lung squamous cell carcinoma are able
     to accurately predict the progression of metastasis through lymphatic system,
     inferred from a bioinformatics analyses (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities: []
 description: Network generated by mapping candidate oncogenes and tumor suppressor
   genes identified by integrated analysis of expression array and aCGH data. Networks
diff --git a/_pathways/WP2446.md b/_pathways/WP2446.md
@@ -81,6 +81,9 @@ citedin:
   title: Genes whose expressions in the primary lung squamous cell carcinoma are able
     to accurately predict the progression of metastasis through lymphatic system,
     inferred from a bioinformatics analyses (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - CPTAC
 - Diseases
diff --git a/_pathways/WP246.md b/_pathways/WP246.md
@@ -26,6 +26,9 @@ citedin:
 - link: PMC12302725
   title: Mammary tissue microbiome analysis in PyMT mice reveals Methylobacteria as
     a commensal organism with potential therapeutic applications (2025)
+- link: PMC8595495
+  title: Thyroarytenoid muscle gene expression in a rat model of early-onset Parkinson’s
+    disease (2021)
 communities: []
 description: NetPath 9 ; cellmap:9 - TNF-alpha/NF-kB Signaling Pathway This cancer
   signaling pathway is available at Cancer Cell Map (http://cancer.cellmap.org) and
diff --git a/_pathways/WP254.md b/_pathways/WP254.md
@@ -107,6 +107,9 @@ citedin:
 - link: PMC13001926
   title: Non-invasive host transcriptome and HPV oncogene expression map the molecular
     landscape of HPV-driven cervical lesions (2026)
+- link: PMC7913660
+  title: A Meta-Analysis of the Effects of High-LET Ionizing Radiations in Human Gene
+    Expression (2021)
 communities:
 - CPTAC
 - Mitochondrion
diff --git a/_pathways/WP2806.md b/_pathways/WP2806.md
@@ -65,6 +65,9 @@ citedin:
 - link: PMC12457906
   title: Extracellular vesicle proteomic expression is influenced by mining tenure
     in former uranium miners (2025)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities: []
 description: 'The complement activation takes place through one or more of the well-established
   (alternative, classical or lectin) pathways consisting of plasma and membrane-bound
diff --git a/_pathways/WP2882.md b/_pathways/WP2882.md
@@ -89,6 +89,9 @@ citedin:
   title: Transcriptome analysis of newly established carboplatin-resistant ovarian
     cancer cell model reveals genes shared by drug resistance and drug-induced EMT
     (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - ONTOX
 description: In the field of molecular biology, nuclear receptors are a class of proteins
diff --git a/_pathways/WP306.md b/_pathways/WP306.md
@@ -66,6 +66,12 @@ citedin:
   title: Identification of potential mutations and genomic alterations in the epithelial
     and spindle cell components of biphasic synovial sarcomas using a human exome
     SNP chip (2015)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - ONTOX
 description: Cell-matrix adhesions play essential roles in important biological processes
diff --git a/_pathways/WP3286.md b/_pathways/WP3286.md
@@ -35,6 +35,9 @@ citedin:
   title: Transcriptome analysis of newly established carboplatin-resistant ovarian
     cancer cell model reveals genes shared by drug resistance and drug-induced EMT
     (2023)
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 communities: []
 description: Copper is a redox-active transition metal and an essential trace element
   for life. It is a catalytic cofactor for numerous enzymes involved in critical biological
diff --git a/_pathways/WP3617.md b/_pathways/WP3617.md
@@ -45,6 +45,9 @@ citedin:
   title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin
     Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics
     Analysis (2024)'
+- link: PMC7913660
+  title: A Meta-Analysis of the Effects of High-LET Ionizing Radiations in Human Gene
+    Expression (2021)
 communities:
 - CPTAC
 description: Photodynamic therapy may induce a pro-inflammatory and angiogenic response
diff --git a/_pathways/WP363.md b/_pathways/WP363.md
@@ -31,6 +31,9 @@ citedin:
     anti-proliferative effects in B lymphoblastic leukaemia cell lines (2020)
 - link: PMC12301734
   title: Investigating Transcriptional Age Acceleration in Inflammatory Skin Diseases
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 communities:
 - ONTOX
 description: 'WNT signal, through the canonical pathway, controls cell fate determination
diff --git a/_pathways/WP3638.md b/_pathways/WP3638.md
@@ -32,7 +32,10 @@ authors:
 - Egonw
 - AlexanderPico
 - Khanspers
-citedin: ''
+citedin:
+- link: PMC8595495
+  title: Thyroarytenoid muscle gene expression in a rat model of early-onset Parkinson’s
+    disease (2021)
 communities:
 - Diseases
 - ExRNA
diff --git a/_pathways/WP3658.md b/_pathways/WP3658.md
@@ -16,7 +16,10 @@ authors:
 - AMTan
 - MaintBot
 - Eweitz
-citedin: ''
+citedin:
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 communities:
 - CPTAC
 - Diseases
diff --git a/_pathways/WP382.md b/_pathways/WP382.md
@@ -66,6 +66,9 @@ citedin:
     pluripotency (2025)
 - link: 10.1038/s41586-025-09579-7
   title: Hotspots of human mutation point to clonal expansions in spermatogonia (2025)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - CPTAC
 - ONTOX
diff --git a/_pathways/WP3888.md b/_pathways/WP3888.md
@@ -67,6 +67,12 @@ citedin:
 - link: PMC11900854
   title: 'Seabirds in crisis: Plastic ingestion induces proteomic signatures of multiorgan
     failure and neurodegeneration (2025)'
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - ONTOX
 description: 'Angiogenesis, the formation of new blood vessels from pre-existing vasculature,
diff --git a/_pathways/WP3932.md b/_pathways/WP3932.md
@@ -41,6 +41,12 @@ citedin:
 - link: PMC12891642
   title: Plasma exosomal hsa-miR-339-5p is associated with NOD-like receptor family
     CARD domain-containing 5 in heart failure with reduced ejection fraction (2026)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - CPTAC
 - ONTOX
diff --git a/_pathways/WP3981.md b/_pathways/WP3981.md
@@ -14,7 +14,13 @@ authors:
 - Maxvanson
 - Fehrhart
 - Eweitz
-citedin: ''
+citedin:
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - CPTAC
 - ExRNA
diff --git a/_pathways/WP4016.md b/_pathways/WP4016.md
@@ -58,6 +58,9 @@ citedin:
   title: Comparative RNA-Sequencing Analysis Reveals High Complexity and Heterogeneity
     of Transcriptomic and Immune Profiles in Hepatocellular Carcinoma Tumors of Viral
     (HBV, HCV) and Non-Viral Etiology (2022)
+- link: PMC7913660
+  title: A Meta-Analysis of the Effects of High-LET Ionizing Radiations in Human Gene
+    Expression (2021)
 communities:
 - CPTAC
 description: 'In fission yeast, the rad3 gene product plays a critical role in sensing
diff --git a/_pathways/WP4149.md b/_pathways/WP4149.md
@@ -25,6 +25,9 @@ citedin:
 - link: 10.1038/s41598-023-33585-2
   title: Bioinformatics analysis of the pathogenic link between Epstein-Barr virus
     infection, systemic lupus erythematosus and diffuse large B cell lymphoma (2023)
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 description: The transcription factors involved in white fat cell differentiation
   are shown, specifically their pattern of activity from the preadipocyte to the adipocyte
   (fat cells) stage. Adipose tissue, composed of white and brown adipose tissue, is
diff --git a/_pathways/WP4155.md b/_pathways/WP4155.md
@@ -38,6 +38,9 @@ citedin:
   title: Serum extracellular vesicle microRNAs as potential biomarkers to predict
     pembrolizumab response and prognosis in metastatic non-small cell lung cancer
     patients (2025)
+- link: PMC8743585
+  title: Clinical and Molecular Characteristics of PRKACA L206R Mutant Cortisol-Producing
+    Adenomas in Korean Patients (2021)
 communities:
 - CPTAC
 - Diseases
diff --git a/_pathways/WP4217.md b/_pathways/WP4217.md
@@ -33,6 +33,9 @@ citedin:
 - link: PMC12034122
   title: Characterization and comparative profiling of piRNAs in serum biopsies of
     pediatric Wilms tumor patients (2025)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - Diseases
 description: The Ebola virus (EBOV) pathway represents the virus infection on humans,
diff --git a/_pathways/WP4223.md b/_pathways/WP4223.md
@@ -23,6 +23,9 @@ citedin:
     Tissue in Skin Metabolism (2024)
 - link: PMC12301734
   title: Investigating Transcriptional Age Acceleration in Inflammatory Skin Diseases
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - CPTAC
 - ONTOX
diff --git a/_pathways/WP4239.md b/_pathways/WP4239.md
@@ -28,6 +28,9 @@ citedin:
 - link: PMC7198491
   title: Phenotypic and functional characterization of corneal endothelial cells during
     in vitro expansion (2020)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - CPTAC
 description: 'Epithelial to mesenchymal transition (EMT) is a process during which
diff --git a/_pathways/WP4240.md b/_pathways/WP4240.md
@@ -20,6 +20,9 @@ citedin:
   title: Genes whose expressions in the primary lung squamous cell carcinoma are able
     to accurately predict the progression of metastasis through lymphatic system,
     inferred from a bioinformatics analyses (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - CPTAC
 description: In prometaphase, highly condensed chromosomes establish bipolar attachments
diff --git a/_pathways/WP437.md b/_pathways/WP437.md
@@ -64,6 +64,12 @@ citedin:
 - link: PMC12470172
   title: Altered Neuroinflammatory Transcriptomic Profile in the Hippocampal Dentate
     Gyrus Three Weeks After Lateral Fluid Percussion Injury in Rats (2025)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - ONTOX
 description: 'Epidermal growth factor receptor (EGFR) also known as ErbB1/HER1 is
diff --git a/_pathways/WP466.md b/_pathways/WP466.md
@@ -53,6 +53,9 @@ citedin:
   title: Genes whose expressions in the primary lung squamous cell carcinoma are able
     to accurately predict the progression of metastasis through lymphatic system,
     inferred from a bioinformatics analyses (2023)
+- link: PMC8304581
+  title: Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by
+    Meta-Analysis of Gene Expression Data (2021)
 communities:
 - ONTOX
 description: 'Studies in the past decade have suggested that the basic mechanism of
diff --git a/_pathways/WP4754.md b/_pathways/WP4754.md
@@ -67,6 +67,9 @@ citedin:
 - link: PMC13001926
   title: Non-invasive host transcriptome and HPV oncogene expression map the molecular
     landscape of HPV-driven cervical lesions (2026)
+- link: PMC7913660
+  title: A Meta-Analysis of the Effects of High-LET Ionizing Radiations in Human Gene
+    Expression (2021)
 communities: []
 description: Interleukin-18 (IL-18) is a member of the IL-1 family of cytokines and
   was initially described as an IFN-γ-inducing factor derived from anti-CD3-stimulated
diff --git a/_pathways/WP481.md b/_pathways/WP481.md
@@ -36,6 +36,9 @@ citedin:
 - link: PMC11980838
   title: EIF3D safeguards the homeostasis of key signaling pathways in human primed
     pluripotency (2025)
+- link: PMC8037168
+  title: Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid
+    Differentiation and Primary from Immortalized Erythroid Cells (2021)
 communities:
 - ONTOX
 description: Insulin signaling influences energy metabolism as well as growth. The
diff --git a/_pathways/WP493.md b/_pathways/WP493.md
diff --git a/_pathways/WP519.md b/_pathways/WP519.md
diff --git a/_pathways/WP543.md b/_pathways/WP543.md
diff --git a/_pathways/WP673.md b/_pathways/WP673.md
diff --git a/_pathways/WP707.md b/_pathways/WP707.md
diff --git a/_pathways/WP710.md b/_pathways/WP710.md
