added baseline charge subtraction to analysis

Author: sammykatta

Analysis/SK/AnnotatedScripts/Velocity_VoltageAtt_180913.m

@@ -344,12 +344,12 @@
 %% Correct all velocities and export for Igor fitting of Boltzmann to each recording
 
 % Set the filename
-fname = 'PatchData/attCorrectedVel(181204).xls';
+fname = 'PatchData/attCorrectedVel_subQ(190217).xls';
 noCorr = 0;
 normFlag = 1; %normalize to 40mm/s ramp (highest velocity "step")
 normVel = 39740; % must be negative for off
 tol = 12;
-dType = 'decay';
+dType = 'charge';
 
 for i = 1:2
 whichRamp = i; % 1 for on currents, 2 for off currents
@@ -481,8 +481,8 @@
 %% Calculate ratios
 % re-save vel_Out as on/offVelChrg and on/offVelPeak for the corresponding
 % cases
-on = antOnCurr;
-off = antOff_Curr;
+on = antOnChar;
+off = antOffChar;
 out = on(1,:);
 
 onVel = [on{2:end,1}];

Analysis/SK/Scripts-in-progress/wtVsFat_Ramps.m

@@ -74,19 +74,19 @@
 
 
 %% Find MRCs 
-% antAllSteps(180810).xlsx and antAllStepsFat(181129).xlsx
+% antAllRampsWT(180810).xlsx and antAllRampsFat(181129).xlsx
 protList ={'DispRate'};
 matchType = 'first';
 
 sortSweeps = {'velocity','velocity','magnitude','magnitude'};
 
 wtMRCs = IdAnalysis(ephysData,protList,wtCells,'num','matchType',matchType, ...
     'tauType','thalfmax', 'sortSweepsBy', sortSweeps, 'integrateCurrent',1 , ...
-    'recParameters', ephysMetaData,'sepByStimDistance',1);
+    'recParameters', ephysMetaData,'sepByStimDistance',1,'subZeroCharge',1);
 
 fatMRCs = IdAnalysis(ephysData,protList,fatCells,'num','matchType',matchType, ...
     'tauType','thalfmax', 'sortSweepsBy', sortSweeps, 'integrateCurrent',1 , ...
-    'recParameters', ephysMetaData,'sepByStimDistance',1);
+    'recParameters', ephysMetaData,'sepByStimDistance',1,'subZeroCharge',1);
 
 clear protList sortSweeps matchType
 
@@ -95,7 +95,7 @@
 %% Correct all sizes and export for Igor fitting of Boltzmann to each recording
 
 % Set the filename and parameters
-fname = 'PatchData/ramps_wtVsFat_2p5kHz_allDist(181130).xlsx';
+fname = 'PatchData/ramps_wtVsFat_allFreq_allDist(190218).xlsx';
 
 tol = 12;
 
@@ -116,7 +116,7 @@
 corrOn = 0; %no voltage attenuation correction if 0
 
 whichMRCs = wtMRCs;
-dType = 'curr'; 
+dType = 'decay'; 
 
 switch dType
     case 'curr'

Analysis/SK/Scripts-in-progress/wtVsFat_Steps.m

@@ -69,11 +69,11 @@
 
 wtMRCs = IdAnalysis(ephysData,protList,wtCells,'num','matchType',matchType, ...
     'tauType','thalfmax', 'sortSweepsBy', sortSweeps, 'integrateCurrent',1 , ...
-    'recParameters', ephysMetaData,'sepByStimDistance',1);
+    'recParameters', ephysMetaData,'sepByStimDistance',1,'subZeroCharge',1);
 
 fatMRCs = IdAnalysis(ephysData,protList,fatCells,'num','matchType',matchType, ...
     'tauType','thalfmax', 'sortSweepsBy', sortSweeps, 'integrateCurrent',1 , ...
-    'recParameters', ephysMetaData,'sepByStimDistance',1);
+    'recParameters', ephysMetaData,'sepByStimDistance',1,'subZeroCharge',1);
 
 clear protList sortSweeps matchType
 
@@ -82,7 +82,7 @@
 %% Correct all sizes and export for Igor fitting of Boltzmann to each recording
 
 % Set the filename and parameters
-fname = 'PatchData/steps_CC_wtVsFat_2p5kHz_allDist(181129).xlsx';
+fname = 'PatchData/steps_wtVsFat_2p5kHz_allDist_subQ(181129).xlsx';
 
 eachSize = [0.5 1 1.5 3 4 5 6 7 8 9 10 11 12]';
 distLimits = [40 200]; % limit to same average distance for anterior and posterior
@@ -94,10 +94,10 @@
 % Step to normalize to
 normFlag = 1; % yes, add normalized sheets
 normStepSize = 10; % must be negative for off
-corrOn = 1 %no voltage attenuation correction if 0
+corrOn = 0; %no voltage attenuation correction if 0
 
 whichMRCs = wtMRCs;
-dType = 'curr'; 
+dType = 'decay'; 
 
 switch dType
     case 'curr'