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README.md

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Start with the Import folder, which contains ImportPatchData, which calls on SplitSeries and ImportHEKAtoMat.
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Katta et al. 2018
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=================
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Code for the Katta et al. (2018) preprint "Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans" (https://www.biorxiv.org/content/10.1101/587014v1) and any published articles resulting from this manuscript can be found in the folder Analysis/SK. Useful scripts are listed below. Simulated data were generated separately and loaded into Matlab with this code for making plots.
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Code for the Katta et al. (2018) preprint "Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans" (https://www.biorxiv.org/content/10.1101/587014v1) and any published articles resulting from this manuscript can be found in the folder Analysis/SK. Simulated data were generated separately and loaded into Matlab with this code for making plots.
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### Important scripts are listed below:
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AnalyzePatchData.m is a general script with examples for importing data and metadata, checking for bad sweeps, and running various types of analyses.
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intVsDiss_Steps.m does a pilot comparison of the minimally dissected ("intact") preparation vs. the regular ("dissected") preparation.
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Other functions necessary for understanding the details of analysis are listed below.
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### Other functions necessary for understanding the details of analysis are listed below.
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IdAnalysis.m takes the mean of technical replicates within a recording by grouping stimuli considered to be the same, calculates the peak current in response to each stimulus (on, off, repeated steps) within each mean sweep, and outputs a cell array with mean traces, stimulus parameters, peak current and kinetics. This function can be used when analyzing by stimulus displacement, position, speed, or inter-stimulus interval. It relies on newStepFind and findMRCs.
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