Revert "added plots (.svgs) and fix of compartments (no influence on results)"

This reverts commit 6a08d55.

Author: PHvanLent

README.md

@@ -5,6 +5,7 @@
 3. models: consists of the bioprocess models 
 4. scripts: consists of the building of bioprocess models (build_models dir), the analysis (two directoreis), and a setup_configs for the construction of the config files for simulation.
 
+
 ```
 BenchmarkProjectDSMF
 ├── data
@@ -39,13 +40,8 @@ BenchmarkProjectDSMF
 └── tests
 ```
 
-#### Simulation data generated repo
-Datasets generated through config files that were used for the downstream analysis
-can be found at the [4tu](10.4121/f2833f74-2586-4632-8c44-7d98ead11a34) repository.
-
 #### Running your own simulated DBTL scenarios (TODO)
 We provide a workflow for running simulated DBTL scenarios
 Step 1: Construct a config file using a [command line interface](scripts/ChassisConfig(NOTTESTEDYET).py) or make a manual config setup python scripts inspired by one of the scripts used in this [work](scripts/setup_configs) 
 
 
-