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AbhignaNagaraj/README.md

Hi, I'm Abhigna N U

PhD-trained Computational Biologist specializing in:

  • RNA Bioinformatics
  • NGS & Transcriptomics
  • Structural Bioinformatics
  • Aptamer Discovery
  • Computational Drug Discovery
  • Workflow Automation

Featured Projects

AI-Assisted Aptamer Discovery Pipeline

End-to-end computational SELEX-NGS workflow integrating motif discovery, RNA structure prediction, thermodynamic filtering, and protein–RNA docking.

AutoRNASeq

Scalable RNA-seq workflow integrating Nextflow, Docker, Python, and Streamlit for reproducible transcriptomics analysis.

RNA2DNA

Structural bioinformatics webserver for RNA-to-DNA structural conversion.

Technical Skills

Python • Linux • Nextflow • Docker • RNA-seq • Molecular Docking • GROMACS • RDKit • AlphaFold2 • Bioinformatics • Structural Biology

Research Interests

RNA therapeutics, aptamer discovery, computational biology, AI-assisted drug discovery, structural bioinformatics, and scalable bioinformatics workflows.

Pinned Loading

  1. AI-Aptamer-Discovery-Pipeline AI-Aptamer-Discovery-Pipeline Public

    End-to-end computational SELEX-NGS pipeline for RNA aptamer discovery, motif analysis, RNA structure prediction, and protein–RNA docking.

    Python 1

  2. AutoRNASeq AutoRNASeq Public

    Automated RNA-seq Analysis Pipeline using Nextflow, Docker, Python, and Streamlit

    Nextflow

  3. Combined-Sequence-and-structural-Protein-Aggregation-Mutation-Suggestion-Pipeline Combined-Sequence-and-structural-Protein-Aggregation-Mutation-Suggestion-Pipeline Public

    Python

  4. RNA2DNA_Dashboard RNA2DNA_Dashboard Public

    Interactive Streamlit dashboard for converting ssRNA structures into ssDNA with 3D visualization using structural bioinformatics workflows.

    Python

  5. Protein-Physicochemical-Analysis-Dashboard Protein-Physicochemical-Analysis-Dashboard Public

    Python-based bioinformatics toolkit for automated physicochemical profiling and comparative analysis of protein sequences using Biopython.

    Python