pdex-0.2.1

What's Changed

• feat: add epsilon parameter to dampen sparsity-artifact fold changes by @sullivanj91 in #72
• ci: enforce semver bump on pull requests by @sullivanj91 in #73

New Contributors

• @sullivanj91 made their first contribution in #72

Full Changelog: pdex-0.2.0...pdex-0.2.1

pdex-0.2.0

What's Changed

• Integrate pdex2 by @noamteyssier in #68
  • numba backend is stabilized and is the only path through pdex now (implementation in https://github.com/ArcInstitute/numba-mwu)
  • only statistical test supported is MWU (other approaches were not maintained and likely error prone)
  • Sparse matrix operations are prioritized and fully supported with CSR
  • API has breaking changes but much reduced configuration to improve clarity
  • Polars output is defaulted over pandas
  • Introduced new modes ("ref", "all", "on_target") to change differential expression scheme
  • Improved is_log1p test with warning that is quieted on explicit configuration
• Feat/backed adata by @noamteyssier in #69
  • Supported in new version and reduce amount of double instantiations (when using "ref" mode)
• Pdex 0.2.0 by @noamteyssier in #70

Full Changelog: pdex-0.1.28...pdex-0.2.0

pdex-0.1.28

What's Changed

• Add Backed AnnData Support via Low-Memory Chunked Processing and Numba Kernels by @nick-youngblut in #64

New Contributors

• @nick-youngblut made their first contribution in #64

Full Changelog: pdex-0.1.27...pdex-0.1.28

pdex-0.1.27

What's Changed

• 60 fix invalid p value by @noamteyssier in #61

Full Changelog: pdex-0.1.26...pdex-0.1.27

pdex-0.1.26

What's Changed

• Update _single_cell.py by @MingzeDong in #58

New Contributors

• @MingzeDong made their first contribution in #58

Full Changelog: pdex-0.1.25...pdex-0.1.26

pdex-0.1.25

What's Changed

• 56 fix log transformation guess by @noamteyssier in #57

Full Changelog: pdex-0.1.24...pdex-0.1.25

pdex-0.1.24

What's Changed

• feat: compute rank sum via histogram by @drbh in #49

Full Changelog: pdex-0.1.23...pdex-0.1.24

pdex-0.1.23

What's Changed

• 45 fix typing issues in single cell by @noamteyssier in #47

Full Changelog: pdex-0.1.22...pdex-0.1.23

pdex-0.1.22

What's Changed

• feat: experimental vectorized and numba parallelized implementation by @drbh in #44

New Contributors

• @drbh made their first contribution in #44

Full Changelog: pdex-0.1.21...pdex-0.1.22

pdex-0.1.21

What's Changed

• fix: shared memory usage for Windows by @patrickfletcher in #43

New Contributors

• @patrickfletcher made their first contribution in #43

Full Changelog: pdex-0.1.20...pdex-0.1.21