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Archaeo-ProgrammerArchaeo-Programmer
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Adding bacon age models.
1 parent 89558f7 commit c2b1e23

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‎data-raw/bacon_age_models/individual_cores/headlake/headlake copy.csv‎

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labID,age,error,depth,cc
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surface,-30,5,0,0
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Salsola rise,70,20,8.5,1
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Beta-30226,1740,150,12.5,1
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A-05142,5230,190,25,1
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Beta-30562,10490,290,37.5,1
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A-05143,11060,160,50,1
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A-05144,9440,340,110,1
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A-05145,10080,650,200,1

‎data-raw/bacon_age_models/individual_cores/headlake/headlake.csv‎

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labID,age,error,depth,cc
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surface,-30,5,0,0
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Salsola rise,70,20,8.5,0
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Beta-30226,1740,150,12.5,0
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A-05142,5230,190,25,0
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Beta-30562,10490,290,37.5,0
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A-05143,11060,160,50,0
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A-05144,9440,340,110,0
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A-05145,10080,650,200,0

‎data-raw/bacon_age_models/individual_cores/headlake/headlake_50.bacon‎

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## Ran on Tue Sep 5 22:44:14 2023
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Cal 0 : ConstCal;
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Cal 1 : IntCal20 , 0 ;
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Cal 2 : Marine20 ;
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Cal 3 : SHCal20 , 0 ;
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## id. age std depth delta.R delta.STD t.a t.b cc
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Det 0 : surface , -30, 5, 0, 0, 0, 3, 4, 0;
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Det 1 : Salsola rise , 70, 20, 8.5, 0, 0, 3, 4, 0;
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Det 2 : Beta-30226 , 1740, 150, 12.5, 0, 0, 3, 4, 0;
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Det 3 : A-05142 , 5230, 190, 25, 0, 0, 3, 4, 0;
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Det 4 : Beta-30562 , 10490, 290, 37.5, 0, 0, 3, 4, 0;
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Det 5 : A-05143 , 11060, 160, 50, 0, 0, 3, 4, 0;
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Det 6 : A-05144 , 9440, 340, 110, 0, 0, 3, 4, 0;
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Det 7 : A-05145 , 10080, 650, 200, 0, 0, 3, 4, 0;
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Det 8 : NA , 10080, 11060000, 240, 0, 0, 3, 4, 0;
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## K MinAge MaxAge th0 th0p w.a w.b alpha beta dmin dmax seed
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Bacon 0: FixT, 50, -73, 1e+06, -35, -30, 5, 5, 1.5, 0.03, 0, 250, 103224;

‎data-raw/bacon_age_models/individual_cores/headlake/headlake_50.bacon.last‎

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### Run finished: Tue Sep 5 22:44:29 2023
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-30.843 20.3656 17.4272 641.419 98.9844 165.451 101.59 134.271 121.209 6.56773 76.7125 65.9873 7.51605 29.771 13.6672 62.3576 26.0978 99.0916 24.0532 12.9902 73.656 14.0396 47.7069 40.1879 82.0875 14.6134 145.168 59.6831 25.3525 61.105 118.122 12.981 95.3538 29.8654 40.4156 54.3846 41.9259 52.8072 43.9851 149.179 21.0437 77.3751 69.3596 53.2828 41.4565 11.7904 75.6445 33.6649 117.727 18.3619 20.5133 0.00147263
3+
-40.6034 9.152 19.5815 718.061 38.1201 245.32 69.337 42.086 68.3976 45.0159 74.283 44.2303 22.7341 2.0488 50.4955 43.7499 56.4869 19.2951 12.3426 32.9818 43.0464 4.09693 83.4539 48.9804 6.34758 58.7601 11.0901 66.8594 47.1584 6.22899 13.0628 22.4673 13.1725 18.0487 20.9433 40.9675 6.5661 3.83099 21.1383 10.0811 25.7675 12.1924 110.769 84.3718 78.5133 58.4658 106.486 120.721 57.7885 111.706 46.2573 0.00865053

‎data-raw/bacon_age_models/individual_cores/headlake/headlake_50.out‎

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‎data-raw/bacon_age_models/individual_cores/headlake/headlake_50.pdf‎

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‎data-raw/bacon_age_models/individual_cores/headlake/headlake_50_ages.txt‎

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depth min max median mean
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0 -46 -17 -31 -31
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3 -32 44 -3 0
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7 0 115 46 50
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10 19 195 90 94
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13 1326 2391 1942 1921
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17 2585 4214 3547 3503
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20 2885 5052 4080 4049
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23 3907 5234 4655 4632
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25 4274 5519 5060 5020
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27 4424 5729 5210 5175
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30 4594 6287 5397 5409
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32 4727 6428 5553 5563
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34 4825 6670 5697 5717
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37 5005 6959 5901 5925
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40 5138 7202 6090 6122
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42 5271 7291 6203 6232
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44 5358 7413 6313 6341
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47 5511 7614 6488 6510
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50 5642 7817 6655 6680
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53 5755 7915 6787 6810
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57 5930 8091 6967 6984
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60 6049 8229 7096 7114
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70 6498 8636 7552 7555
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80 6956 8988 7990 7982
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90 7428 9406 8430 8415
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100 7871 9752 8854 8841
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110 8364 10119 9292 9282
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120 8693 10711 9669 9678
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130 9021 11190 10055 10077
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160 9979 12709 11220 11263
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200 11325 14632 12787 12835
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240 13003 16910 14836 14888

‎data-raw/bacon_age_models/individual_cores/headlake/headlake_depths.txt‎

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0
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3
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7
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10
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13
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17
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20
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23
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25
10+
27
11+
30
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32
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34
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37
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40
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42
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44
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47
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50
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53
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57
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60
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70
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80
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90
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100
27+
110
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120
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130
30+
160
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200
32+
240

‎data-raw/bacon_age_models/individual_cores/headlake/headlake_settings.txt‎

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0 #d.min
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240 #d.max
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1 #d.by
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1 #depths.file
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#slump
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50 #acc.mean
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1.5 #acc.shape
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0.5 #mem.mean
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10 #mem.strength
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NA #boundary
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NA #hiatus.depths
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10000 #hiatus.max
13+
10000 #hiatus.max
14+
0 #BCAD
15+
1 #cc
16+
0 #postbomb
17+
IntCal20 #cc1
18+
Marine20 #cc2
19+
SHCal20 #cc3
20+
ConstCal #cc4
21+
cm #depth.unit
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0 #normal
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3 #t.a
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4 #t.b
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0 #delta.R
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0 #d.STD
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0.95 #prob
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yr#age.unit

‎data-raw/bacon_age_models/individual_cores/headlake/neotoma/dataset3054_site2955.csv‎

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"name","group","element","units","context","S57918","S57919","S57920","S57921","S57922","S57923","S57924","S57925","S57926","S57927","S57928","S57929","S57930","S57931","S57932","S57933","S57934","S57935","S57936","S57937","S57938","S57939","S57940","S57941","S57942","S57943","S57944","S57945","S57946","S57947","S57948","S57949"
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AnalysisUnitName,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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Depth,,,,,0,3,7,10,13,17,20,23,25,27,30,32,34,37,40,42,44,47,50,53,57,60,70,80,90,100,110,120,130,160,200,240
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Thickness,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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Sample Name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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Sample ID,,,,,57918,57919,57920,57921,57922,57923,57924,57925,57926,57927,57928,57929,57930,57931,57932,57933,57934,57935,57936,57937,57938,57939,57940,57941,57942,57943,57944,57945,57946,57947,57948,57949
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NAPD 1,Radiocarbon years BP,,,,--/-39/--,--/6/--,--/67/--,--/112/--,--/293/--,--/1439/--,--/2298/--,--/3157/--,--/3730/--,--/4572/--,--/5834/--,--/6676/--,--/7517/--,--/8780/--,--/9132/--,--/9246/--,--/9360/--,--/9532/--,--/9702/--,--/9874/--,--/10102/--,--/10272/--,--/10842/--,--/11412/--,--/11982/--,--/12552/--,--/13122/--,--/13692/--,--/14262/--,--/15972/--,--/18252/--,--/20532/--
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SKOPE,Calibrated radiocarbon years BP,,,,-16/-31/-47,45/1/-32,123/58/12,197/108/43,1615/691/140,2847/1561/508,3620/2286/790,3851/3015/1905,4213/3501/2289,4390/3672/2473,4891/3912/2682,5076/4074/2859,5336/4236/3000,5650/4461/3202,5936/4676/3377,6043/4804/3506,6179/4931/3620,6371/5112/3793,6577/5285/3944,6696/5441/4120,6876/5648/4327,7040/5800/4466,7521/6307/4999,7957/6815/5542,8388/7323/6107,8838/7835/6650,9249/8341/7209,9765/8774/7584,10298/9190/7946,11809/10435/9004,13745/12091/10426,16087/14050/12048
9+
Abies,TRSH,pollen,NISP,,1,7,,1,3,,,,,,,,,1,1,,,,,,,2,1,,,,,6,,1,16,5
10+
Acer,TRSH,pollen,NISP,,,,,,1,,,,,,,,,,2,,,2,,,1,,1,2,1,6,,,,,2,
11+
Agave,SUCC,pollen,NISP,,,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
12+
Alnus,TRSH,pollen,NISP,,,,,,,,,1,,,,,,,,,,,,,,,,,,,,,,,,
13+
Amaranthaceae undiff.,UPHE,pollen,NISP,,66,43,41,48,67,39,64,67,82,60,42,48,35,29,24,19,15,23,35,24,22,25,21,83,29,31,,20,11,8,21,15
14+
Ambrosia,UPHE,pollen,NISP,,1,8,1,1,8,4,3,18,23,9,42,36,32,16,9,19,110,12,2,7,15,3,2,2,15,6,2,2,3,,,1
15+
Apiaceae,UPHE,pollen,NISP,,,,,,,,1,,,,2,1,,,1,1,2,,1,3,,2,,,,,,,,,,
16+
Artemisia,UPHE,pollen,NISP,,10,8,9,3,19,3,6,11,27,8,58,60,47,119,26,100,78,181,146,164,147,67,100,81,97,54,72,56,31,22,21,12
17+
Asteraceae undiff.,UPHE,pollen,NISP,,9,6,10,10,11,7,13,7,1,6,1,7,6,14,7,10,3,11,3,6,,4,16,9,3,18,8,6,4,10,21,7
18+
Asteroideae undiff.,UPHE,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1
19+
Author's pollen sum,LABO,,NISP,,302,300,301,301,300,303,302,300,300,306,301,300,300,303,251,300,300,310,302,300,304,304,301,340,305,367,302,202,100,107,203,202
20+
Betula,TRSH,pollen,NISP,,,,,,,,,,,1,,,,,,1,,,,,,,,,,,,,,,1,
21+
Bidens,UPHE,pollen,NISP,,,,,,,1,,,,1,,,,,,,,,,,,,,,,,,,,,,
22+
Botryococcus,ALGA,colony,NISP,,,7,20,9,16,13,,20,31,33,46,35,20,54,,17,32,24,19,47,39,,47,,35,,1,,2,,,
23+
Brassicaceae,UPHE,pollen,NISP,,,,,1,1,,,,,,,1,,,,,,,1,,,,2,,,,,,,2,,2
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Bryophyta,UPBR,spore,NISP,,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
25+
Caryophyllaceae,UPHE,pollen,NISP,,,,,,,,,,,,,1,,2,,,,,,,1,,,,,,,,,,,
26+
Cichorioideae,UPHE,pollen,NISP,,,,1,,,,,,1,,,,1,1,1,,,,,,,2,,,,,,,,,,
27+
Cirsium,UPHE,pollen,NISP,,,,,,,,,,,,,,,,1,,,1,,,,,,,,,,,,,1,
28+
Cyperaceae,UPHE,pollen,NISP,,22,5,14,8,2,10,5,11,11,10,3,16,23,8,19,17,11,22,27,16,44,52,36,11,21,3,6,16,5,7,6,11
29+
Dinoflagellata,DINO,cyst,NISP,,,3,,,,,,,,,,,,,,1,,,,1,,,,,,,,,,,,
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Elaeagnaceae,TRSH,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1,,
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Ephedra nevadensis-type,TRSH,pollen,NISP,,,,,,2,,1,,,,,,,,,,1,,,,,,,,,,,,,,,
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Ephedra undiff.,TRSH,pollen,NISP,,,,1,,,,,,,,,,2,,,,,,,,,,,,,,,,4,1,2,2
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Eriogonum,UPHE,pollen,NISP,,,,,,,,,,,,,,1,2,1,,,,,,1,3,,2,,3,1,,,,3,1
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Fraxinus,TRSH,pollen,NISP,,1,,2,,,,,,,1,,,,1,,,,,,,,,,,,,,,,,,
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Humulus,UPHE,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1
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Indeterminable,UNID,pollen/spore,NISP,,20,3,16,24,8,8,13,2,1,,6,3,5,27,8,,3,15,11,5,,22,23,13,11,6,45,30,27,13,41,31
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Juglans,TRSH,pollen,NISP,,,,,,,,,1,,,,,,,,,,,,,,,,,,,,,,,,
38+
Juniperus,TRSH,pollen,NISP,,42,36,41,22,12,71,19,10,6,37,14,11,6,,18,6,,10,27,4,31,21,45,19,46,15,18,24,10,9,10,22
39+
Linanthus,UPHE,pollen,NISP,,,,,,,,,,1,,,,,,,,,,,,,,,,,,,,,,,
40+
Lupinus,UPHE,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,1,,1,,,,,,,
41+
Lycopodium spike,LABO,counted,number,,88,185,248,211,93,151,268,157,208,252,274,160,112,153,85,90,37,79,54,92,165,240,372,2814,6,2769,544,1625,1000,974,537,225
42+
Myriophyllum,AQVP,pollen,NISP,,,,,,,,1,,1,3,1,3,,,3,,,1,1,1,1,2,,,,,,,,,,
43+
Nuphar,AQVP,pollen,NISP,,,,3,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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Nymphaea,AQVP,pollen,NISP,,,,2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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Onagraceae,UPHE,pollen,NISP,,,,,,,,,,,,,,,,,1,,,,,,,,,,,,,,,,
46+
Ostrya/Carpinus,TRSH,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1,
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Parkinsonia,TRSH,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,,2,,,,1,,,,
48+
Pediastrum undiff.,ALGA,colony,NISP,,30,43,39,5,47,629,145,5000,4876,840,7697,3680,4236,5661,9222,7337,1995,5267,31408,4111,12375,12400,1254,256,,1865,47,1818,100,4,50,751
49+
Phlox,UPHE,pollen,NISP,,,,,,2,,,,,,,,,,,,1,,,,,,,,,,,,,,,
50+
Picea,TRSH,pollen,NISP,,10,12,12,7,9,47,48,23,9,33,11,9,23,11,41,29,30,15,9,19,14,41,2,17,4,51,19,12,,5,19,28
51+
Pinus aristata,TRSH,pollen,NISP,,,,,,,,,,,,,,,,1,,,,,,,,,2,,3,2,,,,,
52+
Pinus edulis-type,TRSH,pollen,NISP,,21,2,19,1,,13,6,,,6,,,,,7,,,2,,1,1,3,,3,1,,8,,,1,,
53+
Pinus flexilis,TRSH,pollen,NISP,,3,,,,,,1,,,,,,,,2,,,1,,,,2,,4,,3,,,,,,2
54+
Pinus ponderosa,TRSH,pollen,NISP,,6,,6,,,1,1,,,1,,,,1,3,,,3,,,4,,,5,,6,,4,,,,3
55+
Pinus undiff.,TRSH,pollen,NISP,,99,103,144,171,114,102,90,91,,108,,,53,56,64,,16,41,,35,60,46,,30,,43,95,20,8,31,45,46
56+
Plantago/Thalictrum,UPHE,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,2,,,,3,,,,,,
57+
Platanus,TRSH,pollen,NISP,,,,,,,2,,,,,,,,,,,,,,,,,,,,,,,,,,
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Poaceae,UPHE,pollen,NISP,,5,6,5,,1,3,27,6,8,6,16,,30,16,32,12,15,9,26,13,15,76,33,28,43,81,22,36,1,3,29,31
59+
Polygonum sensu lato,UPHE,pollen,NISP,,,,,1,,,1,,,,,,,,,,,,,,,,,,,3,,2,,,,
60+
Polypodiophyta,VACR,spore,NISP,,,,1,3,1,1,1,,1,3,,1,1,,1,,,2,1,1,,9,1,9,,9,4,11,,,,5
61+
Populus,TRSH,pollen,NISP,,,1,,,,1,1,,,,,,,,1,,,1,2,,,2,,2,,,,2,,,2,1
62+
Potamogetonaceae,AQVP,pollen,NISP,,,3,,,1,,,3,,,4,1,,,1,1,2,,6,,,21,9,15,5,,2,2,,,,2
63+
Potentilla,UPHE,pollen,NISP,,,,,1,,,,,,,,,,,,1,,,,,,,,2,,,,,,,,
64+
Pseudotsuga,TRSH,pollen,NISP,,,1,,,,,2,,1,,,,,,,,,,,,,3,,5,,,,2,,,,2
65+
Purshia-type,TRSH,pollen,NISP,,,,,,,,,,,,,,,1,1,1,,1,,3,1,,,,,,,,,,,
66+
Quercus,TRSH,pollen,NISP,,2,10,2,3,6,1,1,2,1,1,3,9,5,1,2,8,4,2,9,8,3,6,3,20,9,29,5,1,,,,1
67+
Ranunculaceae undiff.,UPHE,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,1,2,1,,,,,1,,
68+
Rhamnus,TRSH,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1,
69+
Ribes aureum,TRSH,pollen,NISP,,,,,,,,,,,,,,,,,1,,,,,,,,,,,,,,,,
70+
Rosa,TRSH,pollen,NISP,,,,,,,,1,,,,,,,,1,,,,,,1,,,,,,,,,,,
71+
Rosaceae undiff.,UPHE,pollen,NISP,,5,,,,,,,,,,,,,,,,,,,,,,,4,,,1,4,,,3,2
72+
Rumex,UPHE,pollen,NISP,,,,,,,,,,,,,,,1,,,,,,,,,,,,,,,,,,
73+
Ruppia maritima,AQVP,pollen,NISP,,,,,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,
74+
Salix,TRSH,pollen,NISP,,,4,1,4,4,1,1,1,3,,1,,,1,1,1,,5,4,7,6,7,2,7,3,,1,,,1,,
75+
Salsola,UPHE,pollen,NISP,,7,,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
76+
Sarcobatus vermiculatus,TRSH,pollen,NISP,,28,41,10,5,29,11,6,54,47,30,42,30,42,14,21,20,5,,2,,,2,1,,7,,1,6,,,5,11
77+
Solanum,UPHE,pollen,NISP,,,,,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,
78+
Sphaeralcea,UPHE,pollen,NISP,,,,,,,,,,,,1,,,,,,,,,,,,,,,,,,,,,
79+
Spirogyra,ALGA,palynomorph,NISP,,,2,,1,1,,,10,7,4,2,2,3,1,,1,,,,1,,,1,,4,,1,,,,,
80+
Sporormiella,FUNG,spore,NISP,,8,,2,6,,,1,,,1,,,,,,,,15,5,11,4,2,2,,1,,,,,2,,
81+
Stauridium tetras,ALGA,colony,NISP,,5,7,6,2,7,25,12,71,71,29,88,61,65,75,96,86,45,73,177,64,111,111,35,16,,43,7,43,10,2,7,27
82+
Thalictrum,UPHE,pollen,NISP,,1,,,,,,,,,,1,,,,,,,,,1,,,,,,,,,,,,
83+
Thecaphora,FUNG,spore,NISP,,,,,3,,,,,,,,,1,,,,,,,,,,,,,,1,,,,,
84+
Tilletia,FUNG,spore,NISP,,,2,,,1,,,,,,,,,,,,,,,,,,,,,,,,,,,
85+
Tsuga heterophylla,TRSH,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,1,,,,,,,,,
86+
Typha/Sparganium,AQVP,pollen,NISP,,3,1,1,,3,,1,2,2,,2,2,5,,4,1,3,,,,,10,,,,,,,,,,
87+
Unknown,UNID,pollen/spore,NISP,,2,,,1,,,,,,,6,,,,4,,,1,1,,,10,,10,,3,,8,,,12,18
88+
Unknown,UNID,spore,NISP,,,75,49,49,14,3,,,3,3,1,4,,1,,8,4,24,14,33,35,,23,,8,,24,,3,,,
89+
cf. Collinsia,UPHE,pollen,NISP,,,,,,,,,,,,,,,,,,,,,,,,,,1,,,,1,,,

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