Releases: AustralianBioCommons/gen3-dataops-toolkit
Release list
v2.1.2
Bug-fix release, found by the first tag-push data release on the platform.
Fixes
athena:GetWorkGroupAccessDenied in CodeBuild — awswrangler defaults to theprimaryworkgroup, which the platform's workgroup-scoped roles deny.AthenaConfiggains an optionalworkgroup, andg3dt release writeruns every query in the env's SSM-published workgroup.- Model→database search scoped to the env —
find_db_for_modelno longer scans every Glue database in the account:g3dt release writerestricts it to the env's own silver/gold DBs (from SSM), making release rows deterministic in shared accounts.
Full Changelog: v2.1.1...v2.1.2
v2.1.1
Bug-fix release, found by the first on-box run of 2.1.0.
Fixes
NoRegionErroron the EC2 job box — botocore only honoursAWS_DEFAULT_REGION, notAWS_REGION, so on a box provisioned by CDK user-data (which exportsAWS_REGIONand has no~/.aws/config) every SSM/S3 session failed to resolve a region. The resolver and the S3 study-registry fallback now build their boto3 sessions with theg3dt.yamlmarker'sregionexplicitly; a moto regression test reproduces the box's exact environment.
Full Changelog: v2.1.0...v2.1.1
v2.1.0
The dbt data-release surface: this release makes the platform's CodeBuild pipelines fully name-free (june refactor doc 06).
Features
g3dt release write— records the dbt data-release manifest in the env's Icebergreleasesledger. Resolves the release DB/table, table location, Athena output and region from SSM, so the buildspec passes only--env, the tag-derived version, and the commit SHA. Idempotent;--dry-runprints the resolved target and the INSERT SQL without writing (bf4b029)g3dt pipeline status/g3dt pipeline logs [--follow]— watch the dbt CodePipeline/CodeBuild by their SSM-published names, mirroring theg3dt jobsUX;--followtails the latest build's CloudWatch stream to a terminal status (bf4b029)g3dt config dbt-env— emits shell exports of every dbt setting (workgroup, Athena output, region, bronze/silver/gold DBs,s3_data_dirs) from the env's SSM tree, powering theenv_var()-parameterised gen3-dbt-template:eval "$(g3dt config dbt-env --env test)" && dbt build. EmitsG3DT_DBT_TARGET=localwhen your marker has a profile for the env, selecting the named-profile dbt target for laptop runs (7815a0f)release_writergains a callablerun(...)core and--dry-runsupport
Full Changelog: v2.0.0...v2.1.0
v2.0.0
First release of gen3-dataops-toolkit (g3dt) — the operations CLI of the Gen3 DataOps platform.
g3dt operates Gen3 AWS data-pipeline environments deployed by gen3-aws-data-pipeline: every resource name is resolved live from AWS SSM Parameter Store, so the same wheel operates any project with only a tiny local bootstrap marker.
Features
- SSM-first configuration — a cached, typed resolver reads the per-environment tree (
/{project}/{env}/...) published bycdk deploy; no AWS resource name is compiled into the package (87f06f8) g3dt.yamlbootstrap marker replaces all local config: project/region/default env, optional per-env AWS profiles and study registry; the registry can also live ats3://<metadata-bucket>/config/studies.yamlso the EC2 job box needs no local setup- Disconnect-safe EC2 dispatch via SSM Run Command — instance id and log destinations resolve from the target env's own tree, making cross-environment dispatch structurally impossible; watch with
g3dt jobs logs --follow - Self-contained wheel — the operational service scripts ship inside the package and receive settings as
G3DT_*environment variables; a barepip installis a complete install (no repo clone, git, or poetry anywhere at runtime) - Command surface:
dict,synth,metadata,delete,k8s,indexd,ec2,jobs,config— includingconfig show/diffas the pre-job safety check and typed-confirmation guards on all destructive/production paths - CI + release automation — pytest with moto-backed AWS mocks and a project-identity guard; GitHub Releases publish to PyPI (7a45e69)
Provenance & versioning
Ported (working tree only) from acdc-aws-etl-pipeline. Versions ≤ 1.2.0 on PyPI are the legacy acdc_aws_etl_pipeline package, which continues to operate the legacy ACDC pipeline unchanged.
Full Changelog: https://github.com/AustralianBioCommons/gen3-dataops-toolkit/commits/v2.0.0