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fDA 0.2.0.0 with miniprot #64

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fDA 0.2.0.0 with miniprot #64

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7e5a62c
Merge pull request #1 from BIONF/master
HannahBioI Oct 23, 2023
8700d87
Merge branch 'BIONF:master' into master
HannahBioI Feb 8, 2024
3092ad6
Merge pull request #3 from BIONF/master
HannahBioI Feb 12, 2024
5b553ac
Merge pull request #5 from BIONF/master
HannahBioI Sep 10, 2025
9c5ed49
Merge pull request #7 from BIONF/master
HannahBioI Dec 17, 2025
81ff564
Added miniprot as second search tool for candidate region determinati…
HannahBioI Apr 12, 2026
c1a35e1
enabled lowComplexity filter for blastp
HannahBioI Apr 19, 2026
c6748cc
Merge branch 'master' of https://github.com/BIONF/fDOG into fDA-0.2.0.0
HannahBioI Apr 19, 2026
7dc9ac9
added miniprot to conda_requirements.txt
HannahBioI Apr 19, 2026
0c36c39
New fast track mode included using miniprot results for ortholog search
HannahBioI Apr 25, 2026
fc437cd
new fallback strategy using miniprot predictions if metaeuk or august…
HannahBioI May 10, 2026
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1 change: 1 addition & 0 deletions fdog/data/conda_requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -6,3 +6,4 @@ mafft
muscle>=5.1
augustus>=3.5.0
metaeuk
miniprot
2 changes: 2 additions & 0 deletions fdog/data/dependencies.txt
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Expand Up @@ -4,3 +4,5 @@ clustalw
mafft
muscle
augustus
metaeuk
miniprot
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