volumetry

Signed-off-by: neuronflow <florian.kofler@tum.de>

Author: neuronflow

AURORA/tutorial.ipynb

@@ -401,21 +401,21 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": 14,
    "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "non-tumor voxels: 8834339\n"
+      "metasis volume (including edema) 93661\n"
      ]
     }
    ],
    "source": [
-    "# now we can use the capabilities of numpy without having to re-read a nifti file, for example we could compute the number of non-tumor voxels as follows:\n",
-    "non_tumor_voxels = results[\"segmentation\"] == 0\n",
-    "print(\"non-tumor voxels:\", np.count_nonzero(non_tumor_voxels))"
+    "# now we can use the capabilities of numpy without having to re-read a nifti file, for example we could compute the number of metastasis voxels (the volume of the metastasis) as follows:\n",
+    "whole_metastasis_voxels = results[\"segmentation\"] > 0\n",
+    "print(\"metasis volume (including edema)\", np.count_nonzero(whole_metastasis_voxels))"
    ]
   }
  ],