Trying out other readme format

Author: MichaelClerx

tutorial/README.md

@@ -9,43 +9,43 @@ Running locally will require the dependencies from `requirements.txt`.
 [↩ Back to the main repository](https://github.com/CardiacModelling/VoltageClampModel)
 
 
-## Modelling patch-clamp experiments 
+## 1. Modelling patch-clamp experiments 
 [![github](./img/github.svg)](./1-modelling-patch-clamp.ipynb)
 [![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/1-modelling-patch-clamp.ipynb)
 
 The first notebook describes the uncompensated patch-clamp set up, and derives an ODE model from the electrical schematics.
 
-## Modelling electronic compensation
+## 2. Modelling electronic compensation
 [![github](./img/github.svg)](./2-compensation.ipynb)
 [![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/2-compensation.ipynb)
 
 The model is updated to include the compensation circuitry commonly used in patch-clamp amplifiers.
 
-## Simulating a manual patch clamp experiment 
+## 3. Simulating a manual patch clamp experiment 
 [![github](./img/github.svg)](./3-simulations.ipynb) 
 [![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/3-simulations.ipynb)
 
 We walk through and simulate the early steps of a manual patch-clamp experiment.
 
-## Simplified models 
+## 4. Simplified models 
 [![github](./img/github.svg)](./4-simplifications.ipynb) 
 [![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/4-simplifications.ipynb)
 
 In the final notebook, we derive simplified models and compare with previous work.
 
 ## Resources
 
-[![github](./img/github.svg)](./symbols.ipynb) 
-[![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/symbols.ipynb)
-**Names and symbols** A table of all symbols, their meanings, and names used in other publications.
+- [![github](./img/github.svg)](./symbols.ipynb) 
+  [![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/symbols.ipynb)
+  **Names and symbols** A table of all symbols, their meanings, and names used in other publications.
 
-[![github](./img/github.svg)](./tour.ipynb) 
-[![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/tour.ipynb)
-**Default parameter values** and comments on how to reparameterise the model, are given in the Model Tour.
+- [![github](./img/github.svg)](./tour.ipynb) 
+  [![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/tour.ipynb)
+  **Default parameter values** and comments on how to reparameterise the model, are given in the Model Tour.
 
-[![github](./img/github.svg)](./references.ipynb) 
-[![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/references.ipynb)
-**References** and further reading.
+- [![github](./img/github.svg)](./references.ipynb) 
+  [![nbviewer](./img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/references.ipynb)
+  **References** and further reading.
 
 Finally, there are [several appendices](./appendix), which provide background on electronics and details of the model derivation.
 

tutorial/appendix/README.md

@@ -21,8 +21,8 @@ These appendices provide background or technical details that did not fit the ma
 2. [![github](../img/github.svg)](./b-op-amps/2-non-ideal-op-amp.ipynb)
    [![nbviewer](../img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/appendix/b-op-amps/2-non-ideal-op-amp.ipynb)
    Models of an op amp with a finite speed 
-3. [![github](../img/github.svg)](./b-op-amps/3-resulting-vc-models.ipynb)[![nbviewer]
-   (../img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/appendix/b-op-amps/3-resulting-vc-models.ipynb)
+3. [![github](../img/github.svg)](./b-op-amps/3-resulting-vc-models.ipynb)
+   [![nbviewer](../img/nbviewer.svg)](https://nbviewer.jupyter.org/github/CardiacModelling/VoltageClampModel/tree/main/tutorial/appendix/b-op-amps/3-resulting-vc-models.ipynb)
    VC models based on different op-amp models
 
 ## C: Series resistance compensation