Search results

error while running cactus-graphmap-join

Status: Open.

#1944 In ComparativeGenomicsToolkit/cactus;

· namitadube opened on Jun 3, 2026

Pre-filtering overlapping assembly contigs before Minigraph-Cactus

Status: Open.

#1943 In ComparativeGenomicsToolkit/cactus;

· hrluo93 opened on May 22, 2026

Strategies for highly heterozygous haplotype-resolved eukaryotic pangenomes with extreme structural variation

Status: Open.

#1937 In ComparativeGenomicsToolkit/cactus;

· GitEnricoNeko opened on May 14, 2026

Confusing vcfbub parameter usage: when to use --max-ref-length (-r) vs --max-allele-length (-a)?

Status: Open.

#1935 In ComparativeGenomicsToolkit/cactus;

· yeeus opened on May 12, 2026

Question about graph complexity and downstream suitability of Minigraph-Cactus graph for a haploid fungal species

Status: Open.

#1934 In ComparativeGenomicsToolkit/cactus;

· Sumit1331 opened on May 6, 2026

cactus-update-prepare add branch output adds erroneous text and causes pipeline to fail when run

Status: Open.

#1928 In ComparativeGenomicsToolkit/cactus;

· foreignsand opened on May 1, 2026

Error while running hal2maf

Status: Open.

#1925 In ComparativeGenomicsToolkit/cactus;

· josh3397 opened on Apr 23, 2026

Progressive cactus issue with --slurmArgs

Status: Open.

#1923 In ComparativeGenomicsToolkit/cactus;

· josh3397 opened on Apr 22, 2026

Changing the reference genome in minigraph_cactus run results in failed job - Job used more disk than requested

Status: Open.

#1922 In ComparativeGenomicsToolkit/cactus;

· evcurran opened on Apr 22, 2026

Haplotype input naming and using primary assembly as reference

Status: Open.

#1919 In ComparativeGenomicsToolkit/cactus;

· hrluo93 opened on Apr 15, 2026

clip_vg

Status: Open.

#1917 In ComparativeGenomicsToolkit/cactus;

· jwli-code opened on Apr 14, 2026

Question about interpreting ODGI chromosome visualization and zooming into variable regions

Status: Open.

#1916 In ComparativeGenomicsToolkit/cactus;

· Sumit1331 opened on Apr 14, 2026