Skip to content

Commit 57723ef

Browse files
committed
better toc
1 parent b2450a7 commit 57723ef

1 file changed

Lines changed: 22 additions & 29 deletions

File tree

docs/itcr_connectivity.md

Lines changed: 22 additions & 29 deletions
Original file line numberDiff line numberDiff line change
@@ -3,50 +3,43 @@ This section includes a reference of all ongoing and existing connections betwee
33

44
A connectivity map featuring all ITCR projects can be found [here](https://www.ndexbio.org/#/network/04c0a7e8-af92-11e7-94d3-0ac135e8bacf).
55

6-
<!-- vscode-markdown-toc -->
7-
- [<a name='ExistingConnections'></a>Existing Connections](#existing-connections)
8-
- [<a name='DCMTK'></a>DCMTK](#dcmtk)
9-
- [<a name='DCMQI'></a>DCMQI](#dcmqi)
10-
- [<a name='CaPTk'></a>CaPTk](#captk)
11-
- [<a name='SynapsePACS'></a>Synapse PACS](#synapse-pacs)
12-
- [<a name='TCIAandIDC'></a>TCIA and IDC](#tcia-and-idc)
13-
- [<a name='OngoingDevelopment'></a>Ongoing Development](#ongoing-development)
14-
- [<a name='XNAT'></a>XNAT](#xnat)
15-
- [<a name='FLAIM'></a>FLAIM](#flaim)
16-
- [<a name='PRISM'></a>PRISM](#prism)
17-
18-
<!-- vscode-markdown-toc-config
19-
numbering=false
20-
autoSave=true
21-
/vscode-markdown-toc-config -->
22-
<!-- /vscode-markdown-toc -->
23-
24-
## <a name='ExistingConnections'></a>Existing Connections
25-
26-
### <a name='DCMTK'></a>DCMTK
6+
- [Existing Connections](#existing-connections)
7+
- [DCMTK](#dcmtk)
8+
- [DCMQI](#dcmqi)
9+
- [CaPTk](#captk)
10+
- [Synapse PACS](#synapse-pacs)
11+
- [TCIA and IDC](#tcia-and-idc)
12+
- [Ongoing Development](#ongoing-development)
13+
- [XNAT](#xnat)
14+
- [FLAIM](#flaim)
15+
- [PRISM](#prism)
16+
17+
## Existing Connections
18+
19+
### DCMTK
2720
FeTS uses [DCMTK - DICOM ToolKit (DCMTK)](https://dicom.offis.de/dcmtk.php.en) for DICOM file handling.
2821

29-
### <a name='DCMQI'></a>DCMQI
22+
### DCMQI
3023
FeTS leverages [DICOM for Quantitative Imaging (DCMQI)](http://qiicr.org/dcmqi-guide/tutorials/intro.html) for generating DICOM-Seg files from NIfTI files.
3124

32-
### <a name='CaPTk'></a>CaPTk
25+
### CaPTk
3326
FeTS leverages the [Cancer Imaging Phenomics Toolkit (CaPTk)](https://www.med.upenn.edu/cbica/captk) for integrating CaPTk's current functionality into FeTS.
3427

35-
### <a name='SynapsePACS'></a>Synapse PACS
28+
### Synapse PACS
3629
FeTS' performance evaluation metrics are used by [Synapse PACS](https://www.synapse.org/).
3730

38-
### <a name='TCIAandIDC'></a>TCIA and IDC
31+
### TCIA and IDC
3932
Enriching [The Cancer Imaging Archive (TCIA)](https://www.cancerimagingarchive.net/) and [Imaging Data Commons (IDC)](https://datacommons.cancer.gov/repository/imaging-data-commons) data collections with segmentations and radiomic features. Robustness analysis on radiomic features on TCIA data has also been posted back to TCIA.
4033

41-
## <a name='OngoingDevelopment'></a>Ongoing Development
34+
## Ongoing Development
4235

43-
### <a name='XNAT'></a>XNAT
36+
### XNAT
4437
Use FeTS' federated learning functionality for data discovery through [XNAT](https://xnat.org) features through its feature extraction functionality.
4538

46-
### <a name='FLAIM'></a>FLAIM
39+
### FLAIM
4740
Interoperability and privacy preservation algorithmic comparison.
4841

49-
### <a name='PRISM'></a>PRISM
42+
### PRISM
5043
Federated learning for segmentation of PRISM data.
5144

5245
Contact [contact [at] fets.ai](mailto:contact@fets.ai) with any questions.

0 commit comments

Comments
 (0)