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Gagniuc/README.md
Algorithms for Cyber Defense: From Cryptography to Behavioral Analysis! A repository for resources and updates related to the Algorithms special issue. Focused on secure algorithmic solutions for cyber defense, including encryption, authentication, anomaly detection, reverse engineering, and security-aware AI. Submission deadline: July 31, 2026. |
Statement [+] Special Issue | Algorithms for Cyber Defense
Python Coding Examples from Simple to Complex JavaScript Coding Examples from Simple to Complex MATLAB Coding Examples from Simple to Complex
Bioinformatics Algorithms in JavaScript Visual Basic (VBA; VB 6.0) - Markov-Chains An Introduction to Programming Languages: Simultaneous Learning in Multiple Coding Environments

Note: all applications presented here are designed natively in their respective programming or scripting languages, without libraries or external files. Thus, the applications have no dependencies and can be used offline. There are about 100 posts uploaded here, however, below are some useful projects that I have chosen to show as a preview:

Jupiter Bioinformatics (V1) Jupiter Bioinformatics V2 (normal) Jupiter Bioinformatics V2 (dark) Jupiter Bioinformatics V2 experiments Sequence Logo (relative style) Sequence Logo (block style)

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Discrete Probability Detector (DPD) Predictions with Markov Chains Objective Digital Stains Markov Chains scanner Linear congruential generator Information content vs percentage A high discrimination motif scanner A high discrimination motif scanner (variable sensitivity) Information content vs Information entropy Sequence Logo (relative style with axes) Sequence Logo (block style with axes) Spectral Forecast model for signals Chaos & noise Spectral Forecast equation for signals Spectral Forecast equation for matrices

Waveform-mixing-with-Spectral-Forecast-in-JS Waveform-mixing-with-Spectral-Forecast-in-JS Waveform-mixing-with-Spectral-Forecast-in-JS

Waveform-mixing-with-Spectral-Forecast-in-JS Waveform-mixing-with-Spectral-Forecast-in-JS Waveform-mixing-with-Spectral-Forecast-in-JS

native - Java Script Charts native - Java Script Charts native - Java Script Charts

Diabetes prediction prototype Prototype software for Photon-pixel coupling method PI laboratory in VB6 Motif detection VB6 Visual Sequence Alignment in VB6 Markov Chains detector in VB6Dynamic Block Allocation algorithm PromKappa 3.0 Objective Digital Stains in VB6 Markov Chains Simulation framework

Markov Chains Prediction framework Spectral-Forecast-equation-VB6-app-2.0 Markov Chains The weather

Bioinformatics Algorithms in JavaScript Bioinformatics Algorithms in JavaScript PromKappa 3.0 Objective Digital Stains in VB6

RNA complementarity DNA complementarity Entropy of text

Delta Memory Force 2.0 on Windows 11

Delta Memory Force 2.0

Delta Memory Force was originally developed in Bacău, Romania, between 1999 and 2001, on a modest Pentium computer, before permanent Internet access became common.

The application reflects the Windows 95/98/ME/2000 shareware era, when memory optimization and process-management utilities were widely used.
After more than two decades preserved on old hard drives, the original project is now released freely as a piece of history.


Algorithms in Visual Basic for Applications

More [+]
Binary files inside EXCEL VBA Spectral Forecast in EXCEL

  • Paul A. Gagniuc. An Introduction to Programming Languages: Simultaneous Learning in Multiple Coding Environments. Synthesis Lectures on Computer Science. Springer International Publishing, 2023, pp. 1-280.

  • Paul A. Gagniuc. Coding Examples from Simple to Complex - Applications in Python. Synthesis Lectures on Computer Science. Springer International Publishing, 2024, pp. 1-245.

  • Paul A. Gagniuc. Coding Examples from Simple to Complex - Applications in MATLAB. Synthesis Lectures on Computer Science. Springer International Publishing, 2024, pp. 1-255.

  • Paul A. Gagniuc. Coding Examples from Simple to Complex - Applications in Javascript. Synthesis Lectures on Computer Science. Springer International Publishing, 2024, pp. 1-240.

  • Paul A. Gagniuc. Antivirus Engines: From Methods to Innovations, Design, and Applications. Cambridge, MA: Elsevier Syngress, 2024. pp. 1-656. ISBN: 9780443329524

  • Paul A. Gagniuc. Markov chains: from theory to implementation and experimentation. Hoboken, NJ, John Wiley & Sons, USA, 2017, pp. 1-256. ISBN: 978-1-119-38755-8.

  • Paul A. Gagniuc. Algorithms in Bioinformatics: Theory and Implementation. John Wiley & Sons, Hoboken, NJ, USA, 2021, pp. 1-528. ISBN: 9781119697961.

More [+]
Gagniuc

gagniuc.github.io

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  1. Bioinformatics-HTML5-Implementations Bioinformatics-HTML5-Implementations Public

    These All-in-one Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers.

    HTML 6 1

  2. Information-Content-vs-Information-Entropy Information-Content-vs-Information-Entropy Public

    This is an application designed in HTML5/Javascript of a scanner that makes a comparison between two methods, namely between Shanon entropy (Information entropy) and self-sequence alignment (Inform…

    HTML 7

  3. Jupiter-Bioinformatics-V2-dark Jupiter-Bioinformatics-V2-dark Public

    Jupiter Bioinformatics (V2 - dark) - local sequence alignment, is an open source application designed in native JavaScript, that is able to align two sequences/texts in order to match the regions t…

    HTML 13

  4. Spectral-Forecast-equation-for-matrices Spectral-Forecast-equation-for-matrices Public

    A more complex example that uses the spectral forecast equation is related to matrices. A question that can be asked this time would be: given two matrices A and B, what would a third matrix (M) lo…

    HTML 5

  5. Spectral-Forecast-equation-for-signals Spectral-Forecast-equation-for-signals Public

    One of the easiest applications to understand the spectral forecast equation is related to signals. A question that can be asked would be: given two signals A and B, what would a third signal M loo…

    HTML 5

  6. Chaos-and-Noise Chaos-and-Noise Public

    Chaos & noise is an implementation that suggests by experiment that the universe is deterministic. Initially, the experiment was used to show why there are limits in predicting the behavior of phys…

    HTML 26 1