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@GenSpectrum

GenSpectrum

Open web APIs and dashboards for genomic epidemiology
README.md

GenSpectrum

Contributors ✨

Our current core team:

Chaoran Chen
Chaoran Chen 		Taepper
Alexander Taepper 		Fabian Engelniederhammer
Fabian Engelniederhammer 		Jonas Kellerer
Anna Parker
Jonas Kellerer
Christian Jaeger 		fhennig
Felix Hennig 		tanja819
Tanja stadler

All contributors (emoji key):

Sarah Nadeau
Sarah Nadeau
🤔 🔣 💻		 Michael Yared
Michael Yared
💻		 Philippe Voinov
Philippe Voinov
💻		 ningxie
ningxie
💻		 Cornelius Roemer
Cornelius Roemer
🤔		 DrYak
DrYak
🔣		 gautier-collab
gautier-collab
💻
David Meyer
David Meyer
💻		 Anastasia Escher
Anastasia Escher
💻		 Theo Sanderson
Theo Sanderson
💻 🤔		 Adrian Lison
Adrian Lison
💻		 Jonas Zarzalis
Jonas Zarzalis
💻		 Philip Schulz
Philip Schulz
💻		 GeorgKreuzmayr
GeorgKreuzmayr
💻 🔬
Daniel Grittner
Daniel Grittner
💻 🔬		 David Gichev
David Gichev
💻 🔬		 dr-david
dr-david
🔣 🔬		 Gordon J. Koehn
Gordon J. Koehn
💻		 mcarrara
mcarrara
🔣

This project follows the all-contributors specification. Contributions of any kind welcome!

Pinned Loading

  1. dashboards dashboards Public

    TypeScript 7

  2. cov-spectrum-website cov-spectrum-website Public

    A web platform to detect and analyze variants of SARS-CoV-2

    TypeScript 61 15

  3. LAPIS LAPIS Public

    An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2

    Kotlin 31 6

  4. LAPIS-SILO LAPIS-SILO Public

    High-performance analytical database for sequence alignment data

    C++ 18 5

  5. dashboard-components dashboard-components Public

    TypeScript 4

Repositories

Showing 10 of 29 repositories
  • cov-spectrum-website Public

    A web platform to detect and analyze variants of SARS-CoV-2

    GenSpectrum/cov-spectrum-website’s past year of commit activity
    TypeScript 61 GPL-3.0 15 84 11 Updated Apr 10, 2026
  • LAPIS Public

    An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2

    GenSpectrum/LAPIS’s past year of commit activity
    Kotlin 31 AGPL-3.0 6 64 10 Updated Apr 10, 2026
  • dashboards Public
    GenSpectrum/dashboards’s past year of commit activity
    TypeScript 7 AGPL-3.0 0 108 17 Updated Apr 10, 2026
  • influenza-override-groups Public

    This directory creates a JSON that contains the mapping of Influenza genbank assemblies to segment accessions

    GenSpectrum/influenza-override-groups’s past year of commit activity
    Python 0 0 6 2 Updated Apr 10, 2026
  • LAPIS-SILO Public

    High-performance analytical database for sequence alignment data

    GenSpectrum/LAPIS-SILO’s past year of commit activity
    C++ 18 AGPL-3.0 5 96 4 Updated Apr 7, 2026
  • dashboard-components Public
    GenSpectrum/dashboard-components’s past year of commit activity
    TypeScript 4 AGPL-3.0 0 67 5 Updated Mar 30, 2026
  • nextclade-datasets Public
    GenSpectrum/nextclade-datasets’s past year of commit activity
    0 0 0 1 Updated Mar 27, 2026
  • LAPIS-SILO-e2e Public
    GenSpectrum/LAPIS-SILO-e2e’s past year of commit activity
    TypeScript 1 1 10 1 Updated Mar 16, 2026
  • evobench Public

    Tool to produce, store and analyze performance data of SILO and perhaps later LAPIS?

    GenSpectrum/evobench’s past year of commit activity
    Rust 1 1 11 1 Updated Feb 28, 2026
  • silo-benchmark-ci Public

    SILO benchmarking CI system setup

    GenSpectrum/silo-benchmark-ci’s past year of commit activity
    Shell 0 0 1 0 Updated Feb 25, 2026
View all repositories

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