v1.8.3

unique ID used in generated SAM/BAM file headers for PG tags;
small bugs fixed;

v1.8.2

New supports of customized tags in classifySAM, classifyBED and classifyVCF utility programs

v1.8.1 New GTypeIndex based classify utilities

Introducing the new GTypeIndex based classify??? utilities, which is faster, more memory efficient, and supports unlimited number of different genetic types (gtypes).

v1.7.4

Faster utility program implementations by adding '--nr' option;
Some bugs fixed

v1.7.3

Minor update version with a new utility 'sam2CoverSumm' introduced;
'--norm-rpm' option added for all sam2Cover utilities;
some bugs fixed

v1.7.2

The 'stats mapped' tool now uses much less RAM when searching through coordinate sorted SAM/BAM files
Small bug fixes for AlignerBoost utilities

Post-publication release

This is the first new release after the publication of AlignerBoost on PLoS Comput. Biol. 2016.
This release contains new utility tools and re-organized help messages.

New features:
New utility tools 'filterWigFix', 'filterWigVar', 'wigFix2RelCover',
'wigVar2RelCover' introduced.
Better help messages.
Some message display bugs fixed.

v1.6.2

Pre-publication release v1.6.2

v1.6.1

Introduction of pairing probability in paired-end alignment mapQ calculation

v1.5.3

New 'best_mode' option introducted into configuration file