ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

Evaluating the residual motion in fMRI connectome and visualise reports

Brain atlases for use with HALFpipe

The ENIGMA Imputation Protocol as a container for your local workstation or high-performance compute cluster

AI-powered, repository-aware assistant for understanding, navigating, and reasoning about large Python codebases using semantic search, structured indexing, and optional conversational memory. Built for local developer workflows with a CLI-first design.

Example scripts for the HALFpipe `group-level` command