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HelikarLab / COMO Public

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Fork 8
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CC Integration Update#259

Merged

JoshLoecker merged 8 commits intomainHelikarLab/COMO:mainfrom

cc-integration-updateHelikarLab/COMO:cc-integration-updateCopy head branch name to clipboard

Mar 17, 2026

Conversation Commits8 (8)Checks Files changed

Merged

CC Integration Update#259
JoshLoecker merged 8 commits intomainfrom
cc-integration-update

Commits

Commits on Mar 16, 2026

fix: allow `None` type for figure dirpath
JoshLoecker
committed
fix: allow `None` for output matrix filepaths
JoshLoecker
committed

Commits on Mar 17, 2026

fix: only use gurobi-specific solver settings if gurobi is being used
JoshLoecker
committed
refactor: import required modules
JoshLoecker
committed
feat: allow zFPKM cutoffs (e.g., -3)
JoshLoecker
committed
feat: allow zFPKM cutoffs (e.g., -3)
JoshLoecker
committed
feat: allow forcibly adding basal exchange reactions
JoshLoecker
committed
refactor: re-add legacy column names for CC integration
JoshLoecker
committed

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