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20 changes: 20 additions & 0 deletions pipelines/optimus/Optimus.changelog.md
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# (next version)
2020-04-24 (Date of Last Commit)

* Added a new counting_mode parameter to Optimus workflow which enables processing of single-nuclei datasets

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Is the standard to add a blank line between each bulleted item in the changelog? I don't think we're doing that in dsde-pipelines.

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We never talked about when making the style guide- I will have to update the guide. I changed the changelog here to be single space so that it matches dsde-pipelines.

* Updated Drop-seq tools to v2.3.0; this update is only used when the workflow is set to the single-nuclei mode (counting_mode = sn_rna)

* Updated sctools to support the single-nuclei parameter (counting_mode = sn_rna)

* Added tests for running the workflow when counting_mode = sn_rna

* Updated the Zarr and Loom output to include a global attribute describing the counting mode

* Added new example datasets that can be used with the Optimus workflow

* Updated the README documentation to detail the new counting_mode parameter, describe example datasets, and to include a new FAQ section



# optimus_v2.0.0
2020-02-28 (Date of Last Commit)

* Fixed bug that resulted in emptyDrops output being incorrect

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