move the list of features into the guides

doc/release-notes/11998-features-in-guides.md

@@ -0,0 +1 @@
+A [list of Dataverse features](https://dataverse-guide--12000.org.readthedocs.build/en/12000/admin/features.html) has been added to the guides. See #11998 and #12000.

doc/sphinx-guides/source/admin/features.md

@@ -0,0 +1,319 @@
+# Features
+
+See {doc}`/quickstart/what-is-dataverse` for {ref}`core-capabilities`.
+
+```{contents} Contents:
+:local:
+:depth: 3
+```
+
+## AI
+
+### AI Tools
+
+A number of AI tools integrate with Dataverse.
+{doc}`More information.</ai/index>`
+
+### Model Context Protocol (MCP)
+
+Model Context Protocol (MCP) is a standard for AI Agents to communicate with tools and services.
+{ref}`More information.<mcp>`
+
+## Access and Download
+
+### Faceted Search
+
+Facets are data driven and customizable per collection.
+{doc}`More information.</user/find-use-data>`
+
+### File Previews
+
+A preview is available for text, tabular, image, audio, video, and geospatial files.
+{ref}`More information.<file-previews>`
+
+### Preview URL
+
+Create a URL for reviewers to view an unpublished (and optionally anonymized) dataset.
+{ref}`More information.<previewUrl>`
+
+### Guestbook
+
+Optionally collect data about who is downloading the files from your datasets.
+{ref}`More information.<dataset-guestbooks>`
+
+### File Download in Open Tabular Formats
+
+Proprietary tabular formats are converted into TSV and RData for download.
+{doc}`More information.</user/tabulardataingest/index>`
+
+## Administration
+
+### User Management
+
+Dashboard for common user-related tasks.
+{doc}`More information.</admin/dashboard>`
+
+### Quotas
+
+For number of files, amount of storage, etc.
+{doc}`More information.</admin/collectionquotas>`
+
+### Usage Statistics and Metrics
+
+Download counters, support for Make Data Count.
+{doc}`More information.</admin/make-data-count>`
+
+### Configurable Notifications
+
+In-app and email notifications for access requests, requests for review, etc. can be muted.
+{ref}`More information.<account-notifications>`
+
+## Authentication
+
+### Login via Shibboleth
+
+Single Sign On (SSO) using your institution's credentials.
+{doc}`More information.</installation/shibboleth>`
+
+### Login via ORCID, Google, GitHub, or Microsoft
+
+Log in using popular OAuth2 providers.
+{doc}`More information.</installation/oauth2>`
+
+### Login via OpenID Connect (OIDC)
+
+Log in using your institution's identity provider or a third party.
+{doc}`More information.</installation/oidc>`
+
+## Customization
+
+### Branding
+
+Your installation can be branded with a custom homepage, header, footer, CSS, etc.
+{ref}`More information.<Branding Your Installation>`
+
+### Internationalization
+
+The Dataverse software has been translated into multiple languages.
+{ref}`More information.<i18n>`
+
+### Customization of Collections
+
+Each personal or organizational collection can be customized and branded.
+{ref}`More information.<theme>`
+
+### Widgets
+
+Embed listings of data in external websites.
+{ref}`More information.<dataverse-widgets>`
+
+## FAIR Data Publication
+
+### Support for FAIR Data Principles
+
+Findable, Accessible, Interoperable, Reusable.
+[More information.](https://web.archive.org/web/20191206043258/https://scholar.harvard.edu/mercecrosas/presentations/fair-guiding-principles-implementation-dataverse)
+
+### Versioning
+
+History of changes to datasets and files are preserved.
+{doc}`More information.</user/dataset-management>`
+
+### Prepublication Review Support
+
+Datasets start as drafts and can be submitted for review before publication where curators can mark datasets with curation status labels.
+{ref}`More information.<dataverse-permissions>`
+
+### TK Labels
+
+Integrate with the Local Contexts platform, enabling the use of Traditional Knowledge and Biocultural Labels, and Notices.
+{doc}`More information.</installation/localcontexts>`
+
+## File Management
+
+### File Hierarchy
+
+Users are able to control dataset file hierarchy and directory structure.
+{doc}`More information.</user/dataset-management>`
+
+### Restricted Files
+
+Control who can download files and choose whether or not to enable a "Request Access" button.
+{ref}`More information.<restricted-files>`
+
+### Embargo
+
+Make files inaccessible until an embargo end date.
+{ref}`More information.<embargoes>`
+
+### Retention Periods
+
+Make files inaccessible once the retention period set has passed.
+{ref}`More information.<retention-periods>`
+
+### Metadata Extraction from Files
+
+Populate dataset metadata fields from tabular, NetCDF, HDF5, and FITS files.
+{ref}`More information.<file-handling>`
+
+### Configurable Storage
+
+Choose between filesystem or object storage, configurable per collection and per dataset.
+{doc}`More information.</installation/big-data-support>`
+
+### Direct Upload and Download for S3
+
+After a permission check, files can pass freely and directly between a client computer and S3.
+{doc}`More information.</installation/big-data-support>`
+
+### Fixity Checks for Files
+
+MD5, SHA-1, SHA-256, SHA-512, UNF.
+{ref}`More information.<:FileFixityChecksumAlgorithm>`
+
+### Auxiliary Files for Data Files
+
+Each data file can have any number of auxiliary files for documentation or other purposes (experimental).
+{doc}`More information.</developers/aux-file-support>`
+
+## Geospatial
+
+### Geospatial Metadata Fields
+
+There is a dedicated geospatial metadata block.
+{ref}`More information.<metadata-references>`
+
+### Geospatial File Preview
+
+GeoJSON, GeoTIFF, and Shapefiles can be previewed as a map.
+{ref}`More information.<geojson>`
+
+### Geospatial Search API
+
+Pass `geo_point` and `geo_radius` to find datasets based on their bounding box.
+{doc}`More information.</api/search>`
+
+## Integrations
+
+### DataCite
+
+DOIs are reserved, and when datasets are published, their metadata is published to DataCite.
+{doc}`More information.</admin/discoverability>`
+
+### Handle
+
+Handles are a Persistent ID (PID) that are an alternative to DOIs.
+{ref}`More information.<pids-configuration>`
+
+### Globus
+
+Upload from and download to Dataverse using Globus endpoints.
+{ref}`More information.<globus-support>`
+
+### RSpace
+
+Exchange data and metadata with RSpace (e.g. IGSN ID). For example, a Data Management Plan (DMP) can be uploaded to RSpace and updated with the DOI of a Dataverse dataset.
+{ref}`More information.<rspace>`
+
+### GitHub
+
+A GitHub Action is available to upload files from GitHub to a dataset.
+{doc}`More information.</admin/integrations>`
+
+### iRODS
+
+Pull data from an iRODS instance to a Dataverse dataset.
+{ref}`More information.<irods>`
+
+### Dropbox
+
+Upload files stored on Dropbox.
+{doc}`More information.</admin/integrations>`
+
+### Jupyter Notebooks
+
+Datasets can be opened in Binder to run code in Jupyter notebooks, RStudio, and other computation environments. They can also be previewed in Dataverse itself.
+{ref}`More information.<binder>`
+
+### Galaxy
+
+Import files directly from Dataverse into Galaxy as well as publish datasets containing artifacts (Histories, datasets, etc.) from Galaxy to Dataverse.
+{ref}`More information.<galaxy-integration>`
+
+### External Tools
+
+Enable additional features not built in to the Dataverse software.
+{doc}`More information.</installation/external-tools>`
+
+### Additional Integrations
+
+Dataverse integrates with a wide variety of third party systems, some of which are highlighted above. For a full list, see {doc}`Integrations</admin/integrations>`.
+
+## Interoperability
+
+### APIs
+
+Search API, Data Deposit API, Data Access API, Metrics API, Migration API, etc. and client libraries in various languages.
+{doc}`More information.</api/index>`
+
+### OAI-PMH Metadata Harvesting
+
+Serve and harvest metadata to and from other systems (e.g. DataCite, other Dataverse installations, etc.) using standardized metadata formats: Dublin Core, Data Document Initiative (DDI), OpenAIRE, etc.
+{doc}`More information.</admin/harvestserver>`
+
+### Schema.org JSON-LD
+
+Used by Google Dataset Search and other services for discoverability.
+{ref}`More information.<metadata-export-formats>`
+
+### Croissant
+
+Export metadata as linked data following the Croissant ontology.
+{ref}`More information.<croissant-head>`
+
+### Signposting
+
+Enable easier machine access to datasets by adding linkset in a Dataverse header.
+{ref}`More information.<discovery-sign-posting>`
+
+### External Vocabulary
+
+Let users pick from external vocabularies (provided via API/SKOSMOS) when filling in metadata.
+{ref}`More information.<using-external-vocabulary-services>`
+
+### BagIt Export
+
+For preservation, bags can be sent to the local filesystem, Duracloud, and Google Cloud.
+{ref}`More information.<BagIt Export>`
+
+### RO-Crate
+
+Export dataset metadata as an ro-crate.json.
+{ref}`More information.<metadata-export-formats>`
+
+## Reusability
+
+### Multiple License Support
+
+Users can select from multiple standard and provided custom licenses.
+{ref}`More information.<license-config>`
+
+### Custom Terms of Use
+
+Users can write custom terms of use in place of a predefined license.
+{ref}`More information.<license-terms>`
+
+### Data Citation Formats
+
+EndNote XML, RIS, BibTeX, or 1000+ CSL formats at the dataset or file level.
+{doc}`More information.</user/find-use-data>`
+
+### Provenance
+
+At the file level, upload standard W3C provenance files or enter free text instead.
+{ref}`More information.<provenance>`
+
+### Post-Publication Workflows
+
+Allow publication of a dataset to trigger external processes and integrations.
+{doc}`More information.</developers/workflows>`

doc/sphinx-guides/source/admin/harvestserver.rst

@@ -23,6 +23,8 @@ of such instances.
 
 The email portion of :ref:`systemEmail` will be visible via OAI-PMH (from the "Identify" verb).
 
+Please note that Dataverse can also harvest metadata from other OAI-PMH servers, like :ref:`DataCite <harvesting-from-datacite>`. See :doc:`harvestclients` for details.
+
 How does it work?
 -----------------
 

doc/sphinx-guides/source/admin/index.rst

@@ -13,6 +13,7 @@ This guide documents the functionality only available to superusers (such as "da
 .. toctree::
    :maxdepth: 2
 
+   features
    dashboard
    external-tools
    discoverability

doc/sphinx-guides/source/admin/integrations.rst

@@ -38,13 +38,17 @@ Researcher can configure OSF itself to deposit to your Dataverse installation by
 
 In addition to the method mentioned above, the :ref:`integrations-dashboard` also enables a pull of data from OSF to a dataset.
 
+.. _rspace:
+
 RSpace
 ++++++
 
 RSpace is an affordable and secure enterprise grade electronic lab notebook (ELN) for researchers to capture and organize data.
 
 For instructions on depositing data from RSpace to your Dataverse installation, your researchers can visit https://www.researchspace.com/help-and-support-resources/dataverse-integration/
 
+As shown in a `video <https://www.researchspace.com/blog/dmptool-rspace-eln-dataverse-integration>`_, a Data Management Plan (DPM) can be added into RSpace and the research records and associated data can then be sent to Dataverse. Dataverse generates a Persistent Identifier (PID, often a DOI) for the dataset, and RSpace automatically puts the PID link under "Research Outputs" in the DPM.
+
 Open Journal Systems (OJS) and OPS
 ++++++++++++++++++++++++++++++++++
 
@@ -86,6 +90,8 @@ GitLab is an open source Git repository and platform that provides free open and
 
 The :ref:`integrations-dashboard` enables a pull of data from GitLab to a dataset in Dataverse.
 
+.. _irods:
+
 iRODS
 +++++
 
@@ -152,6 +158,13 @@ Open OnDemand
 
 `Open OnDemand <https://openondemand.org>`_ is a web frontend to High Performance Computing (HPC) resources. Through a system called `OnDemand Loop <https://github.com/IQSS/ondemand-loop>`_, developed at IQSS, researchers can create datasets in Dataverse and upload files to them from their Open OnDemand installation. They can also :ref:`download <ood-download>` files from Dataverse.
 
+.. _galaxy-integration:
+
+Galaxy
+++++++
+
+Import files directly from Dataverse into `Galaxy <https://galaxyproject.org>`_ as well as publish datasets containing artifacts (Histories, datasets, etc.) from Galaxy to Dataverse. For details, see https://github.com/galaxyproject/galaxy/pull/19367
+
 Embedding Data on Websites
 --------------------------
 

doc/sphinx-guides/source/quickstart/what-is-dataverse.md

@@ -10,6 +10,7 @@ A Dataverse repository can host one or more Dataverse collections, which organiz
   - Data files  
   - Documentation or code
 
+(core-capabilities)=
 ## Core Capabilities
 
 ### 📤 Upload, manage, publish and download data files.
@@ -37,4 +38,4 @@ A Dataverse repository can host one or more Dataverse collections, which organiz
 - Compare versions with the detailed version change overview on dataset-level.
 
 ### ✨More features  
-The Dataverse project is continuously evolving. For an overview of capabilities, visit the [features list](https://dataverse.org/software-features).
+The Dataverse project is continuously evolving. For an overview of capabilities, see {doc}`/admin/features` in the Admin Guide.