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  1. transcluster transcluster Public

    Infer transmission clusters from SNP and timing data

    R 16 4

  2. json-to-newick-file-converter json-to-newick-file-converter Public

    Converts json format tree files to newick format

    Python 2 1

  3. treexplore treexplore Public

    Explore the space of transmission trees

    R 1

  4. transnp transnp Public

    Transmission inference using SNP data

    R

  5. indel-pipeline indel-pipeline Public

    Pipeline for indel and SNP calling, plus utilities

    Python 1