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Commit 0077925

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no need to escape eol before a pipe
1 parent e905e0d commit 0077925

2 files changed

Lines changed: 6 additions & 4 deletions

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workflows/spot_extraction.nf

Lines changed: 5 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -35,8 +35,8 @@ workflow spot_extraction {
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z_overlap
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)
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def tiles_with_inputs = index_channel(tile_cut_res[0]) \
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| join(index_channel(tile_cut_res[1])) \
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def tiles_with_inputs = index_channel(tile_cut_res[0])
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| join(index_channel(tile_cut_res[1]))
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| flatMap {
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def index = it[0]
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def tile_input = it[1]
@@ -45,7 +45,9 @@ workflow spot_extraction {
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}
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}
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def airlocalize_inputs = tiles_with_inputs | combine(channels) | map {
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def airlocalize_inputs = tiles_with_inputs
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| combine(channels)
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| map {
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def index = it[0]
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def tile_input = it[1]
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def tile_dir = it[2]

workflows/stitching.nf

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -177,7 +177,7 @@ workflow stitch {
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}
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// create a channel of tuples: [index, spark_uri, acq, stitching_dir, spark_work_dir]
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def indexed_acq_data = indexed_acq_names \
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def indexed_acq_data = indexed_acq_names
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| join(indexed_spark_uris)
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| join(indexed_stitching_dirs)
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| join(indexed_spark_work_dirs)

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