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Release 2.4.1: document use_precomputed_msas for local MMseqs2; add #… AlphaPulldown-CI-CD #1619: Commit 5f2454f pushed by DimaMolod
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AlphaPulldown v2.4.1 AlphaPulldown-CI-CD #1618: Release 2.4.1 published by DimaMolod
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Graph Update: pip in /. #1403172825 Dependency Graph #2: by dependabot Bot
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Fix CI: unpin chex and fetch submodules for AF3 container build AlphaPulldown-CI-CD #1617: Commit d648894 pushed by DimaMolod
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[codex] Update AlphaFold3 to Tokamax v3.0.2 AlphaPulldown-CI-CD #1616: Pull request #623 synchronize by DimaMolod
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codex/update-af3-tokamax-rtx
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[codex] Update AlphaFold3 to Tokamax v3.0.2 AlphaPulldown-CI-CD #1615: Pull request #623 opened by DimaMolod
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codex/update-af3-tokamax-rtx
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Re-pin numpy<2 after jax install in alphafold2 dockerfile AlphaPulldown-CI-CD #1614: Commit 9d26834 pushed by DimaMolod
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Re-pin numpy<2 after jax install in alphafold2 dockerfile AlphaPulldown-CI-CD #1613: Pull request #622 opened by DimaMolod
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fix/af2-dockerfile-numpy2
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Update AL base image in Dockerfile to nvidia/cuda AlphaPulldown-CI-CD #1612: Commit 26ec6f2 pushed by DimaMolod
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Fix #619 AlphaPulldown-CI-CD #1611: Commit ccaf51c pushed by DimaMolod
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pip in /alphafold for pillow - Update #1384916638 Dependabot Updates #4: by dependabot Bot
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pip in /alphafold for filelock - Update #1384916592 Dependabot Updates #3: by dependabot Bot
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Graph Update: pip in /. #1384914565 Dependency Graph #1: by dependabot Bot
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docs: point Snakemake install docs at 2.5.0 AlphaPulldown-CI-CD #1610: Commit 1d940d0 pushed by DimaMolod
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docs: point Snakemake deploy tag and env file to release 2.4.0 AlphaPulldown-CI-CD #1609: Commit 4577f56 pushed by DimaMolod
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docs: sync structure-inference SLURM options + point to release 2.4.0 AlphaPulldown-CI-CD #1608: Pull request #618 opened by DimaMolod
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docs/sync-inference-config-from-snakemake
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Fix mocked precomputed MMseq A3M in integration test AlphaPulldown-CI-CD #1607: Commit 716c061 pushed by DimaMolod
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Codex/mmseq precomputed enrichment AlphaPulldown-CI-CD #1606: Pull request #615 synchronize by DimaMolod
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codex/mmseq-precomputed-enrichment
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Codex/mmseq precomputed enrichment AlphaPulldown-CI-CD #1605: Pull request #615 synchronize by DimaMolod
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codex/mmseq-precomputed-enrichment
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Codex/mmseq precomputed enrichment AlphaPulldown-CI-CD #1604: Pull request #615 opened by DimaMolod
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codex/mmseq-precomputed-enrichment
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AlphaPulldown v.2.4.0 AlphaPulldown-CI-CD #1603: Release 2.4.0 published by DimaMolod
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Bump 2.4.0 AlphaPulldown-CI-CD #1602: Commit ba2f6f0 pushed by DimaMolod
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Make sure random seed is integer AlphaPulldown-CI-CD #1601: Commit 3e74e35 pushed by DimaMolod
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Default threshold, better colors, flag to show best n complexesk AlphaPulldown-CI-CD #1600: Commit 3d51beb pushed by DimaMolod
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Trim release-only AF3 trimer test scaffolding AlphaPulldown-CI-CD #1599: Commit 99a806f pushed by DimaMolod
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