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Adapt vis_clus() functions for use with Xenium data#121

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lahuuki wants to merge 24 commits into
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xenium_vis_functions
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Adapt vis_clus() functions for use with Xenium data#121
lahuuki wants to merge 24 commits into
develfrom
xenium_vis_functions

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@lahuuki lahuuki commented May 5, 2026

Adressing #120

Added vis_clus(datatype = c("Visium", "Xenium")) option. Adapted vis_clus_p to centroid based vis_clus_c which expects 'x_centroid' and 'y_centroid' as spatialCoords and does not add images to plots.

Also added fetch_data(type = "spe_xenium_example") to provide example data for plotting xenium. Includes two samples from ERC xenium data.

Output of vis_clus example plot p6:
vis_clus_xenium_example

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