Conversation
…very; bump 0.9.2 - vision_patch: PatchInferenceEngine/patch_inference accept a list of models and soft-vote per-patch probabilities in one sliding-window pass; AMP forward pass uses bfloat16; keep_largest_component skipped for multi-class; empty model-list guarded - vision_metrics: calculate_all_metrics and evaluate_segmentations per-case panel with spacing-aware ASSD/HD95/NSD read from a single ground-truth LabelMap - utils: find_fold_learners discovers per-fold best_learner.pkl from an MLflow experiment; log_metrics_table strips non-finite values before logging - vision_loss: DynUNetDSAdapter adapts DynUNet deep-supervision output to the list DeepSupervisionLoss expects - tutorials 12b/12c updated for cross-validation and soft-vote ensemble inference - bump version 0.9.1 -> 0.9.2
…workflow - 01_five_fold_cross_validation.ipynb: 5-fold cross-validation over UNet, DynUNet and a SegMamba fork on the patch-based workflow - 02_inference_new_cases.ipynb: 5-fold soft-vote ensemble inference on new cases - ml_dataset.csv (346 CE-T1w cases with pre-assigned folds), README, inference config JSON - gitignore: preprocessed/ and cv_results_*/ notebook run byproducts
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.