This repository provides a bioinformatics pipeline for processing the 3'-seq data of Sommerkamp et al., Cell Stem Cell, 2020 using the mouse UTRome annotation derived from the Microwell-seq data generated by https://github.com/Mayrlab/mca-utrome.
The accompanying manuscript is openly available at:
Fansler, M.M., Mitschka, S. & Mayr, C. Quantifying 3′UTR length from scRNA-seq data reveals changes independent of gene expression. Nat Commun 15, 4050 (2024). https://doi.org/10.1038/s41467-024-48254-9