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@NAMlab

NAMlab

Network Analysis and Modelling Lab at the Leibniz Institute of Plant Genetics and Crop Plant Research

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  1. DeepCRE DeepCRE Public

    Deep learning the cis-regulatory code for gene expression in selected model plants

    R 23 4

  2. PlantEd PlantEd Public

    RTS Simulation, Plant Survival Game

    Python 4 1

  3. deepCRE_reimplemented deepCRE_reimplemented Public

    This repo reimplements deepCRE using tensorflow 2.10.0 and SHAP. Thus replacing tensorflow 1.14.0 and DeepLIFT

    Python 3 2

  4. kILBIL kILBIL Public

    Custom code used in the manuscript:

    R 2 2

  5. DeepCistrome DeepCistrome Public

    This repository contains code and scripts to reproduce the work on multi-label classifiers for DNA-TF binding

    Python 2 2

  6. 2025_Plant2030 2025_Plant2030 Public

    Materials for the Plant2030 Intro to Bioinformatics Workshop at the IPK Gatersleben

    Shell 2

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