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Improve Biolink type reporting#589

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gaurav wants to merge 12 commits intomasterfrom
improved-prefix-table
Draft

Improve Biolink type reporting#589
gaurav wants to merge 12 commits intomasterfrom
improved-prefix-table

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@gaurav gaurav commented Sep 25, 2025

WIP

  • Fix case where the list of Biolink types is incomplete
    • We use STRING_AGG(cliques.biolink_type, '||' ORDER BY cliques.biolink_type ASC) AS biolink_types to get a list of all the Biolink types (and also double-check the CURIE count). This appears to work for every row except for UniProtKB.
    • It would be nice to highlight the cases where it doesn't work (i.e. where the number of Biolink types is not equal to the CURIE count).
    • There must be some way of counting this as a subquery.

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