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Bacillus and Pti5

We have recently identified an ethylene response factor Pti5 as a susceptibility factor that negatively regulates immune response to diverse pathogens. Here, we investigated the processes involved in colonisation of potato with beneficial organisms.

RNA-seq

  • Mapping
  • DE analysis
  • GSEA
  • Network analysis

qPCR

  • various qPCR data analysis: roots/shoots, mutants, mycorrhiza
  • but also analysis of bacterial presence and AMF abundance
This repository follows https://github.com/NIB-SI/pISA-tree structure.

Check README files at each layer.

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understanding endophyte/plant relationships

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