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Nvbench compare process bulk data#386

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oleksandr-pavlyk wants to merge 23 commits into
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oleksandr-pavlyk:nvbench-compare-process-bulk-data
Draft

Nvbench compare process bulk data#386
oleksandr-pavlyk wants to merge 23 commits into
NVIDIA:mainfrom
oleksandr-pavlyk:nvbench-compare-process-bulk-data

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Teach nvbench_compare to parse GPU timing summaries into structured values and
prefer the robust median/IQR summaries when both compared measurements provide
them. Fall back to the existing mean/stdev summaries when robust summaries are
not available.

Classify comparisons with the larger available relative noise estimate instead
of the smaller one, keep unavailable noise distinct from encoded infinite noise,
and report improvements separately from regressions. Keep the process exit code
as success for completed comparisons; regression counts are reported in the
summary instead of being used as the process status.

Make plotting tolerate unavailable noise by leaving gaps in confidence bands,
sort plotted series by the plotted axis, and avoid reusing pyplot state across
plot calls.

Add focused Python tests for robust-summary preference, unavailable-noise
classification, non-finite timing centers, plot-along handling when the selected
axis is absent, and the exit-code contract.
Teach nvbench_compare to keep the order of --benchmark and --axis arguments so
axis filters can apply either globally or to the most recent benchmark. Build a
filter plan from the ordered CLI arguments and apply the same plan to table
output and plotting labels.

Add explicit --reference-devices and --compare-devices filters. The filters
accept all, a single device id, or a comma-separated list of ids; ordered lists
and duplicates are preserved so selected reference and compare devices can be
paired by position. Device-section mismatches remain fatal for unfiltered
all-vs-all comparisons, but become warnings when the user explicitly selects
devices and the selected device counts match.

Match duplicate benchmark states by occurrence within each filtered device
section instead of matching only by state name across the whole benchmark. This
keeps repeated axis values and filtered duplicate states aligned between the
reference and compare inputs, and reports mismatched occurrence counts instead
of silently dropping extra states.

Add Python tests for duplicate-state matching, axis filtering before matching,
device filter parsing and validation, explicit cross-device pairing, and
benchmark-scoped axis filters.

Original commit messages folded into this change:

Tweaks for nvbench_compare

1. When JSON files contain multiple entries with the same name and axis values,
   make sure that scripts compares corresponding entries.

   Previous logic would extract the first entry from ref data, and would compare
   measurements for each state in cmp against the first entry from ref. The
   change introduces a counter to know which nth entry we process for a
   particular axis value, and retrieve corresponding entry in ref.

Scope occurrence matching by device.

Device pairing in nvbench_compare.py is strictly index-based under
--ignore-devices, reused IDs in a different order no longer pair against the
wrong reference device.

Require devices in ref and cmp to have the same cardinality

Handle mismatch when number of duplicates in ref data is not same as in cmp data

Use pytest monkeypatch fixture to pretend third-party package dependencies are
available during test run for nvbench_compare without introducing test-time
dependency

Added the happy-path test and fixed its direct-call setup by initializing the
device globals that main() normally populates.

Fix to filter-before-matching.

 - compare_benches() now pairs devices by selected position instead of taking a
   device id.
 - For each device pair, compare_benches() now builds:
     - ref_device_states: matching reference device and axis filters
     - cmp_device_states: matching compare device and axis filters
 - State occurrence counts and duplicate occurrence matching now operate only
   on those filtered per-device lists.
 - Removed the later matches_axis_filters() skip inside the compare-state loop
   because filtering now happens before matching.

Added a regression test where ref/cmp have duplicate state names in opposite
order, and --axis keeps only one of them. The test verifies the kept compare
state is matched against the kept reference state, not the first unfiltered
occurrence.

Introduce device filtering in nvbench_compare

 - --reference-devices all|ID|ID,ID,...
 - --compare-devices all|ID|ID,ID,...
 - Integer lists preserve order and duplicates.
 - Requested IDs are validated against the file-level device list.
 - Filtered reference/compare device counts must match before comparison.
 - compare_benches() pairs selected reference and compare devices by position.
 - Each benchmark validates that requested device IDs are present in its own
   devices list.

Implemented benchmark-scoped --axis handling.

  - --axis and --benchmark now share an ordered argparse action, so their
    relative CLI order is preserved.
  - -a before any -b becomes a global axis filter.
  - -a after -b <name> applies to that most recent benchmark only.
  - Repeated -b entries are treated as separate filter scopes and combined as
    alternatives for that benchmark.
  - Device filtering remains global and is applied independently.

Allow non-matching devices for explicit device selection

Now the device-section equality check remains fatal only for unfiltered
all-vs-all comparisons. If either --reference-devices or --compare-devices is
explicit, mismatched selected device metadata is printed as a warning, but
comparison proceeds after the selected device counts have been validated.

Fix for resolve_benchmark_device_ids, add comments

The return value of resolve_benchmark_device_ids now always owns its list.

Use monkeypatch class in set_test_devices helper

Stricted device id validation

Test for device id validation
Introduce GpuTimingData, SummaryComparison, ComparisonStats, and
ComparisonRunData to make timing extraction, classification, and run-level
state explicit.

Load sample-time and SM-frequency bulk data from JSON binary output into
GpuTimingData when available, preserving count validation between paired
sample and frequency arrays.

Move GPU timing comparison logic into compare_gpu_timings(), prefer robust
median/IQR data when available, and fall back to mean/stdev summaries otherwise.
Keep missing or invalid noise on the unknown path.

Replace module-level comparison counters and selected-device globals with
per-run data passed into compare_benches(). Update tests to validate timing
classification, bulk-data loading, device pairing, filtered duplicate matching,
and summary counters through the new structures.
It is not emitted just yet, but the code becomes ready for it
when it starts being emitted
Store JSON-bin sample time and frequency metadata in GpuTimingData instead of
reading the binary files during summary extraction.

Add Float32BinarySource and lazy cached accessors for samples and frequencies.
Use np.fromfile by default, but allow tests and alternate callers to inject a
float32 reader returning any buffer-compatible object convertable to "<f4" data
type.

Treat optional bulk-data failures as unavailable evidence instead of aborting
comparison: unreadable files, invalid buffers, count mismatches, and mismatched
sample/frequency metadata now emit RuntimeWarning and return None.

Update nvbench_compare tests to verify lazy loading, cache reuse, injected
reader behavior, warning-based degradation, and count mismatch handling.
Its intent is to be cheaply retrievable metric of average
SM clock frequence over entire sample
The quantile values are not currently used, but plumbed through
Implemented the clear-gap comparison, with the log-distance-equivalent
algebra and pessimistic SM-clock fallback.

What changed:

 - Added TimingInterval and interval construction from summaries:
    - robust interval: [min, q3], centered at median
    - fallback interval: clipped [mean - stdev, mean + stdev] intersected with [min, max]
 - Added CLEAR_GAP_RELATIVE_THRESHOLD = 0.005.
 - FAST gap uses:

   (ref.lower - cmp.upper) / cmp.upper >= delta
   which is equivalent to log(ref.lower / cmp.upper) >= log(1 + delta).
 - SLOW gap uses:

   (cmp.lower - ref.upper) / ref.upper >= delta
 - FAST/SLOW now requires SM clock summaries on both sides and the same clear-gap result after scaling intervals by sm_clock_rate_mean.
 - If intervals are missing, overlap, fail the gap threshold, have missing/invalid clock summaries, or time/cycle comparison disagrees, status is UNDECIDED.
 - Existing center/noise values are still computed and displayed, but no longer drive FAST/SLOW/SAME classification.

Updated tests to cover:

 - center/noise-only comparisons becoming UNDECIDED
 - clear FAST/SLOW with matching clock evidence
 - missing clock fallback to UNDECIDED
 - frequency-shift disagreement becoming UNDECIDED
 - regression reporting with robust interval and clock evidence
If SLOW/FAST check returned undecided, we attempt conservative
SAME check based on summary data alone (bulk data are not read)

Reference and compare measurements are considered SAME if
   - both centers are positive finite values;
   - abs(ref - cmp) / min(ref, cmp) <= 0.5%.
     This is equivalent to max(ref, cmp) / min(ref, cmp) <= 1 + delta;
   - interval overlap must cover at least 50% of the smaller interval;
   - relative dispersion must be finite on both sides and no more than 2%;
   - if SM clock summaries are available, the same check must also pass in cycle space.

Otherwise UNDECIDED remains working decision, to be refined by further checks
- Add DecisionReason(code, message) and internal
  TimingDecision(status, reason).
- SummaryComparison now carries reason
- ComparisonStats now aggregates undecided reasons.
- Final summary prints a reason breakdown only when
  undecided reasons exist, e.g.:

  - Undecided   (comparison requires more evidence): 3
    - Reasons:
      - noise_too_high: 2 (relative dispersion is too
                           high to declare same)
      - weak_interval_overlap: 1 (timing intervals do not
                 overlap strongly enough to declare same)
Add a bulk-data SAME path to nvbench_compare for cases where summary
intervals do not provide a clear FAST/SLOW decision. The new path compares
sample times and SM-clock-adjusted cycles with symmetric nearest-neighbor
coverage over unique values and sample counts.

The comparison now requires both sample-weight coverage and unique-support
coverage to pass before declaring SAME. If bulk data is available but coverage
does not pass, the result remains UNDECIDED instead of falling back to the
summary-only SAME rule.

Also improve undecided diagnostics by aggregating reason codes while preserving
the most severe representative detail, including observed coverage values and
thresholds for bulk support mismatches.

Add tests for:
 - bulk data confirming SAME despite changed mode weights;
 - bulk time mismatch overriding summary-only SAME;
 - cycle coverage vetoing time-only agreement;
 - sample-weight and unique-support coverage diagnostics;
 - aggregation of undecided reason details.
Replace the scattered module-level comparison threshold constants
with a ComparisonThresholds value object. Thread this object through
compare_benches, compare_gpu_timings, and the lower-level clear-gap,
summary-SAME, and bulk-SAME decision helpers.

Keep existing behavior by constructing default ComparisonThresholds
when callers do not provide one. This prepares nvbench-compare for
future CLI-configurable decision thresholds while keeping one consistent
configuration for an entire comparison run.

Add test coverage that passes custom thresholds through compare_benches and
verifies they affect the SAME decision.
Introduce comparison threshold presets in nvbench_compare and thread the
selected preset through main() into compare_benches.

Refine bulk nearest-neighbor support handling by:
  - adding rare-support filtering thresholds
  - ignoring low-count support values only when removed sample mass is small
  - falling back to full support for all-unique or otherwise unusable support
  - keeping sample-weight coverage over all values

Tighten bulk mismatch reporting to show compact min(ref, cmp) coverage
summaries, and add tests covering:
  - rare-tail filtering
  - strict fallback when too much support mass would be removed
  - all-unique support preservation
  - preset lookup and CLI preset propagation
Now:

  - establish a candidate clear timing gap from summary timing intervals, as before
  - if bulk sample times and frequencies are available on both sides,
    compute cycles = time * frequency
  - derive bulk cycle intervals from min/q1/median/q3
  - confirm the gap direction from those bulk cycle intervals
  - only fall back to summary sm_clock_rate_mean confirmation when bulk cycle data
    is unavailable

  I also split the reason codes so the evidence source is visible:

  - clear_gap_confirmed_by_bulk_cycles
  - bulk_cycle_gap_not_confirmed
  - clear_gap_confirmed_by_summary_cycles
  - summary_cycle_gap_not_confirmed

Updated tests in python/test/test_nvbench_compare.py cover both the bulk-confirmed
and bulk-rejected paths, along with the renamed summary reason codes.
Extend nvbench_compare with multiple table display modes and richer interval
formatting for timing comparisons.

Highlights:
  - add `--display` with `intervals`, `legacy`, and `explain` modes
  - keep `legacy` output using scalar Diff/%Diff
  - make `intervals` the default, showing compact center-plus-delta timing
    intervals
  - add `explain` mode with explicit `[L | C | H]` interval rendering and
    self-describing headers
  - compute and store diff and relative-diff intervals in SummaryComparison
  - add formatting helpers for absolute and relative interval displays
  - make default preset slightly more permissive by lowering
    `bulk_same_sample_coverage` to 0.97

Add focused tests covering:
  - diff/%diff interval computation
  - compact and explicit interval formatting
  - default, legacy, and explain table layouts
  - CLI propagation of `--display` and preset selection
Add versioned TOML configuration support for nvbench-compare threshold
settings. The new --config option reads grouped settings for clear-gap,
same-result, bulk coverage, and rare-support filtering thresholds. The parser
validates the schema strictly so unknown tables, unknown keys, invalid types,
unsupported versions, and out-of-range values fail early.

Add --dump-config to print the effective configuration without requiring input
JSON files. This makes the currently selected preset and resolved threshold
values discoverable and gives users a starting point for custom configuration.

Preset resolution is:
  - default is used when neither TOML nor CLI selects a preset
  - [preset] name = "..." in TOML selects the base preset
  - --preset ... overrides the TOML preset selection
  - explicit threshold values in TOML override whichever base preset was selected

For example:
  - nvbench-compare --dump-config
    Prints the built-in default settings as grouped TOML.

  - nvbench-compare --preset permissive --dump-config
    Prints the permissive preset values as TOML.

  - nvbench-compare --config compare.toml ref.json cmp.json
    Compares using the preset named in compare.toml, plus any explicit TOML
    threshold overrides.

  - nvbench-compare --config compare.toml --preset strict ref.json cmp.json
    Uses the strict preset as the base, while preserving explicit threshold
    overrides from compare.toml.

Keep TOML parsing lazy: Python 3.11+ uses tomllib, while Python 3.10 only
requires tomli when --config is used. Add focused tests for grouped config
dumping, strict validation, preset/override precedence, and CLI dump behavior.
It documents use, documents decision tree, configurability,
use of --display option, benchmark/axis filtering and device filtering
Use this option to generate Python script with information needed to load
bulk data from reference/compare datasets for further drill-down into
data.
Add compact reason labels for explain-mode tables while keeping canonical
reason codes in the undecided summary. Emit a one-line legend only for
non-trivial abbreviations.

Refine interval displays so timing values align across table rows:
  - align Lo/Ce/Hi values in explain mode
  - align center values in intervals mode when some rows lack interval bounds
  - avoid repeating units when center and interval deltas use the same unit

Add a Change column for non-legacy displays so FAST/SLOW rows show the
signed interval-bound relative change, while SAME and UNDECIDED rows remain
blank.

Extend nvbench_compare tests to cover reason legend filtering, interval
alignment, missing-interval alignment, and Change column formatting.
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