Search results

Loading default config giving issues

Status: Open.

#2750 In Nesvilab/FragPipe;

· tryhard124 opened on Apr 18, 2026

definition of log2(H/L) in the silac search result file

Status: Open.

#2749 In Nesvilab/FragPipe;

· HYCCHENG opened on Apr 17, 2026

Unable to assign multiple residues in glycan modification definition (NeuAc, NeuGc error)

Status: Open.

#2748 In Nesvilab/FragPipe;

· mitan110 opened on Apr 16, 2026

Var mods issue

Status: Open.

#2742 In Nesvilab/FragPipe;

· gabsjacobson-stack opened on Apr 15, 2026

DIANN pr_matrix table contains UniProts in All Mapped Proteins column that do not contain the Stripped.Sequence

Status: Open.

#2740 In Nesvilab/FragPipe;

· benton-anderson opened on Apr 11, 2026

Issue with text editing .workflow file (Fasta path)

Status: Open.

#2739 In Nesvilab/FragPipe;

· dbutkus opened on Apr 10, 2026

Add ProForma 2.1 Peptidoforms to FragPipe output

Status: Open.

#2733 In Nesvilab/FragPipe;

· mobiusklein opened on Apr 6, 2026

PTMprophet error

Status: Open.

#2717 In Nesvilab/FragPipe;

· jd690764 opened on Mar 27, 2026

OutOfMemoryError: Java heap space

Status: Open.

#2701 In Nesvilab/FragPipe;

· gukongxin opened on Mar 18, 2026

PTM Assignment in Combined Peptide Results

Status: Open.

#2584 In Nesvilab/FragPipe;

· KZ-MS opened on Dec 8, 2025

Metadata-aware MBR

Status: Open.

#2564 In Nesvilab/FragPipe;

· leonardblaschek opened on Nov 25, 2025

example output data

Status: Open.

#2551 In Nesvilab/FragPipe;

· mffrank opened on Nov 20, 2025