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Develop #9
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,72 @@ | ||
| name: CI | ||
|
|
||
| on: | ||
| push: | ||
| branches: [main, master, develop] | ||
| pull_request: | ||
| branches: [main, master, develop] | ||
| workflow_dispatch: # Allow manual triggering | ||
|
|
||
| jobs: | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.12" | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install ruff mypy | ||
| pip install -e ".[dev]" | ||
| - name: Run Ruff linter | ||
| run: ruff check src/ | ||
| - name: Run Ruff formatter check | ||
| run: ruff format --check src/ | ||
| - name: Run MyPy | ||
| run: mypy src/omophub | ||
|
|
||
| test: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.10", "3.11", "3.12", "3.13"] | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install -e ".[dev]" | ||
| - name: Run unit tests with coverage | ||
| run: | | ||
| pytest tests/unit --cov=omophub --cov-report=xml --cov-report=term-missing | ||
| - name: Upload coverage to Codecov | ||
| if: matrix.python-version == '3.12' | ||
| uses: codecov/codecov-action@v5 | ||
| with: | ||
| files: ./coverage.xml | ||
| fail_ci_if_error: false | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
|
|
||
| integration: | ||
| # Only run on push to main/develop, not on PRs (saves ~7-8 min per PR) | ||
| if: github.event_name == 'push' || github.event_name == 'workflow_dispatch' | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.12" | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install -e ".[dev]" | ||
| - name: Run integration tests | ||
| env: | ||
| TEST_API_KEY: ${{ secrets.TEST_API_KEY }} | ||
| run: | | ||
| pytest tests/integration -v | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,47 @@ | ||
| name: Publish to PyPI | ||
|
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||
| on: | ||
| release: | ||
| types: [published] | ||
|
|
||
| permissions: | ||
| contents: read | ||
|
|
||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| with: | ||
| fetch-depth: 0 # Required for hatch-vcs to get version from tags | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.12" | ||
| - name: Install build tools | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install build | ||
| - name: Build package | ||
| run: python -m build | ||
| - name: Upload distributions | ||
| uses: actions/upload-artifact@v5 | ||
| with: | ||
| name: release-dists | ||
| path: dist/ | ||
|
|
||
| publish: | ||
| runs-on: ubuntu-latest | ||
| needs: build | ||
| environment: | ||
| name: pypi | ||
| url: https://pypi.org/project/omophub/ | ||
| permissions: | ||
| id-token: write # Required for trusted publishing | ||
| steps: | ||
| - name: Download distributions | ||
| uses: actions/download-artifact@v5 | ||
| with: | ||
| name: release-dists | ||
| path: dist/ | ||
| - name: Publish to PyPI | ||
| uses: pypa/gh-action-pypi-publish@release/v1 |
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P2: The integration job condition does not restrict push branches, so it also runs on
masterpushes despite the comment saying main/develop only.Prompt for AI agents