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PopovIILab / KrakenParser Public

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feat: modernize KrakenParser#17

Merged

iliapopov17 merged 17 commits into

mainPopovIILab/KrakenParser:mainfrom

devPopovIILab/KrakenParser:devCopy head branch name to clipboard

May 22, 2026

Conversation Commits17 (17)Checks Files changed

Merged

feat: modernize KrakenParser#17
iliapopov17 merged 17 commits into
mainfrom
dev

Commits

Commits on May 22, 2026

fix(kpplot): add explicit re-export for KpPlotBase in init
iliapopov17
committed
ci: migrate workflow from flake8 to ruff
iliapopov17
committed
style(script): apply Ruff import sorting
iliapopov17
committed
refactor(types): fix Pylance warnings in calc_beta_div
iliapopov17
committed
feat(utils): add ensure_output_dir helper
iliapopov17
committed
refactor(mpa): use ensure_output_dir, add logging and input validation
iliapopov17
committed
refactor(counts): use ensure_output_dir and extract main()
iliapopov17
committed
refactor(counts): extract main(), add logging, restore dest-file validation
iliapopov17
committed
refactor(stats): use ensure_output_dir, add logging and startup info
iliapopov17
committed
refactor(pipeline): raise exceptions instead of sys.exit in run_pipeline
iliapopov17
committed
test: add ensure_output_dir unit tests
iliapopov17
committed
test: cover auto-create dirs, new validations, new exception types
iliapopov17
committed
test(pipeline): fix overwrite test — FileExistsError, not SystemExit
iliapopov17
committed
test: add CLI smoke tests for all main() entry points
iliapopov17
committed
test: cover edge cases — _strip_path_prefix, _is_processable, t__ filter
iliapopov17
committed
fix(codecov): correct status schema and move patch to informational
iliapopov17
committed
style(scripts): apply Ruff formatter
iliapopov17
committed

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