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Add simulatePedigrees() for simulating multiple families in one call#150

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smasongarrison merged 9 commits intodev_mainfrom
copilot/feature-simulate-multiple-families
Apr 15, 2026
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Add simulatePedigrees() for simulating multiple families in one call#150
smasongarrison merged 9 commits intodev_mainfrom
copilot/feature-simulate-multiple-families

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Copilot AI commented Apr 13, 2026 •
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  • Understand current simulatePedigrees ID scheme (fam_shift * pow_gen offset)
  • Add sequential ID remapping after rbindlist in simulatePedigrees(): personID becomes 1:nrow, momID/dadID/spouseID remapped accordingly
  • Update tests: removed raw ID match assertion for n_fam=1; added test verifying IDs are exactly 1:nrow and all parent/spouse refs are in range
  • Updated roxygen @return to document sequential IDs

Copilot AI linked an issue Apr 13, 2026 that may be closed by this pull request
[Feature] make it easier to simulate multiple famlies at once #149
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codacy-production bot commented Apr 13, 2026 •
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Up to standards ✅

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Copilot AI and others added 3 commits April 13, 2026 20:39
@smasongarrison
Add simulatePedigrees() function to simulate multiple families at once
b6de8f3 
Agent-Logs-Url: https://github.com/R-Computing-Lab/BGmisc/sessions/9367c84a-deb8-4f13-a855-367a204cc843

Co-authored-by: smasongarrison <6001608+smasongarrison@users.noreply.github.com>
@smasongarrison
Address code review: input validation, use rbindlist, fix test assert…
34f818b 
…ions

Agent-Logs-Url: https://github.com/R-Computing-Lab/BGmisc/sessions/9367c84a-deb8-4f13-a855-367a204cc843

Co-authored-by: smasongarrison <6001608+smasongarrison@users.noreply.github.com>
@smasongarrison
Fix minor punctuation in man/simulatePedigrees.Rd documentation
f3910a3 
Agent-Logs-Url: https://github.com/R-Computing-Lab/BGmisc/sessions/9367c84a-deb8-4f13-a855-367a204cc843

Co-authored-by: smasongarrison <6001608+smasongarrison@users.noreply.github.com>
Copilot AI changed the title [WIP] Add feature to simulate multiple families at once Add simulatePedigrees() for simulating multiple families in one call Apr 13, 2026
Copilot AI requested a review from smasongarrison April 13, 2026 20:42
@smasongarrison smasongarrison changed the base branch from main to dev_main April 13, 2026 21:00
@smasongarrison smasongarrison marked this pull request as ready for review April 13, 2026 21:01
@smasongarrison
Squashed commit of the following:
32684f6 
commit 42ae819
Author: Mason Garrison <garrissm@wfu.edu>
Date:   Mon Apr 13 16:08:31 2026 -0400

    Update test-makeLinks.R
@smasongarrison
smarter id handling
b33820a
@smasongarrison
pipes!
4455fc7
@smasongarrison
Update v2_pedigree.Rmd
c2fa605
@smasongarrison smasongarrison merged commit 217e71f into dev_main Apr 15, 2026
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[Feature] make it easier to simulate multiple famlies at once

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