Home

Jump to bottom

tranchant edited this page Mar 10, 2017 · 41 revisions

Welcome on the SG tutorials wiki

Bioanalysis

Polymorphism detection (INDEL-SNP) from fastq files on linux terminal - C. Dubreuil-Tranchant

Some commands to manipulate VCF files and to extract informations on linux terminal - C. Dubreuil-Tranchant

Bioinformatics tools list - C. Dubreuil-Tranchant

SNP post analysis : vcftools / snpeff / bedtools
SNP post analysis" -
Expression gene RNASeq scripts R
GBS
3000 genomes (plink)
Galaxy
toggle ---> Christine
tools ---> cd

Cluster

How to work on the linux SG server ? (logiciels à installer (mobaxterm), configuration) ----> Ndomassi

SGE (how to start on SGE (command qstat, qhost, qacct)) ---> Ndomassi

Linux ---> Christine, ?

Dev

Git Beginner's Guide for Dummies more - C. Dubreuil-Tranchant

Jekyll
Gbrowse

License

The resource material is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/