Skip to content

Home

Jump to bottom
Christine Tranchant-Dubreuil edited this page Jun 2, 2017 · 41 revisions

Welcome on the SG tutorials wiki

Bioanalysis

Executing a blast against its own sequences database on linux terminal - C. Dubreuil-Tranchant

Polymorphism detection (INDEL-SNP) from fastq files on linux terminal - C. Dubreuil-Tranchant

Some commands to manipulate VCF files and to extract informations on linux terminal - C. Dubreuil-Tranchant

RNA-Seq differential expression on linux terminal - G. Droc

Bioinformatics tools list - C. Dubreuil-Tranchant 

* SNP post analysis : vcftools / snpeff / bedtools 
* **SNP post analysis"** -
* Expression gene RNASeq scripts R
* GBS
* 3000 genomes (plink)
* Galaxy
* toggle ---> sebastien

Cluster

How to work on the linux SG server ? (logiciels à installer (mobaxterm), configuration) ----> Ndomassi

SGE (how to start on SGE (command qstat, qhost, qacct)) ---> Ndomassi

Linux Some commands

Dev

Git Beginner's Guide for Dummies more - C. Dubreuil-Tranchant

Docker : Docker practical - Docker training - C. Dubreuil-Tranchant 

* Jekyll
* Gbrowse

License

The resource material is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/

http://creativecommons.org/licenses/by-nc-sa/4.0/

Clone this wiki locally