Develop

.github/workflows/pkgdown.yaml

@@ -1,40 +1,75 @@
 on:
   push:
-    branches:
-      - main
-      - master
+    branches: master
 
 name: pkgdown
 
 jobs:
   pkgdown:
+    # Use macOS here to speed up by binary R package install (and Windows may have more issues, such as Rtools)
     runs-on: macOS-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: release
 
       - uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Query dependencies
+      - name: Install MacOS system dependencies
+        # We are on macOS as per the "runs-on":
+        #if: runner.os == 'macOS'
         run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Restore R package cache
-        uses: actions/cache@v3
-        with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+          # gfortran may not exist in a period after a new R minor release:
+          gfortranFile='/usr/local/bin/gfortran'
+          if [ -f "$gfortranFile" ] ; then
+            rm "$gfortranFile"
+          fi
+          rm -f '/usr/local/bin/2to3'
+          rm -f '/usr/local/bin/2to3-3.11'
+          rm -f '/usr/local/bin/idle3'
+          rm -f '/usr/local/bin/idle3.11'
+          rm -f '/usr/local/bin/pydoc3'
+          rm -f '/usr/local/bin/pydoc3.11'
+          rm -f '/usr/local/bin/python3'
+          rm -f '/usr/local/bin/python3.11'
+          rm -f '/usr/local/bin/python3-config'
+          rm -f '/usr/local/bin/python3.11-config'
+          rm -f '/usr/local/bin/gfortran'
+          export HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK= # This (the value should actually be empty...) prevents Homebrew from re-installing R, which will lead to .Platform$pkgType = "source".
+          brew install gdal
+        shell: bash
 
-      - name: Install dependencies
+      - name: Install R package dependencies
         run: |
-          remotes::install_deps(dependencies = TRUE)
+          # We hard code the list of top level dependencies, since the behavior of remotes::install_deps() that we used before is very unclear (e.g. how is the Additional_repositories included in the list of repos?):
+          topLevelDeps <- c(
+            # Imports: 
+            "data.table",
+            "ggplot2",
+            "gridExtra",
+            "methods",
+            "RColorBrewer",
+            "rnaturalearth",
+            "rnaturalearthdata",
+            "RstoxData",
+            "RstoxBase",
+            "sf",
+            # Suggests: 
+            "knitr",
+            "rmarkdown",
+            "tinytest"
+          )
+          install.packages(
+            topLevelDeps, 
+            dependencies = TRUE, 
+            repos = c("https://stoxproject.github.io/unstableRepo/", "https://cloud.r-project.org/")
+          )
+
+          # Used in "Deploy package" below:
           install.packages("pkgdown", type = "binary")
         shell: Rscript {0}
 
@@ -45,4 +80,4 @@ jobs:
         run: |
           git config --local user.email "actions@github.com"
           git config --local user.name "GitHub Actions"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
+          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'