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@SysBioChalmers

Systems and Synthetic Biology at Chalmers University of Technology

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  1. Human-GEM Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    MATLAB 134 58

  2. yeast-GEM yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    MATLAB 120 51

  3. RAVEN RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    MATLAB 125 60

  4. GECKO GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    MATLAB 85 52

  5. DLKcat DLKcat Public

    Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

    Python 189 68

Repositories

Showing 10 of 107 repositories
  • yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    SysBioChalmers/yeast-GEM’s past year of commit activity
    MATLAB 120 CC-BY-4.0 51 30 (6 issues need help) 1 Updated Apr 13, 2026
  • Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    SysBioChalmers/Human-GEM’s past year of commit activity
    MATLAB 134 CC-BY-4.0 58 86 2 Updated Mar 30, 2026
  • GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    SysBioChalmers/GECKO’s past year of commit activity
    MATLAB 85 MIT 52 14 2 Updated Mar 29, 2026
  • RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    SysBioChalmers/RAVEN’s past year of commit activity
    MATLAB 125 60 11 (1 issue needs help) 0 Updated Mar 25, 2026
  • overflow Public

    Supplementary code and results from doi:10.1101/2020.02.20.957662

    SysBioChalmers/overflow’s past year of commit activity
    MATLAB 1 0 0 0 Updated Mar 15, 2026
  • Ecoli-GEM Public

    Genome-scale metabolic model for Escherichia coli

    SysBioChalmers/Ecoli-GEM’s past year of commit activity
    HTML 1 CC-BY-4.0 1 5 2 Updated Feb 19, 2026
  • DiversifyCodons Public

    R Shiny App for diversification of codons. We strive to create diverse DNA strings that translate to the same protein sequence.

    SysBioChalmers/DiversifyCodons’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 27, 2026
  • sint-GEM Public

    Genome-scale metabolic model of Sungouiella intermedia

    SysBioChalmers/sint-GEM’s past year of commit activity
    MATLAB 0 GPL-3.0 1 7 0 Updated Jan 15, 2026
  • sce-crabtree-neg-study Public

    To see the results:

    SysBioChalmers/sce-crabtree-neg-study’s past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Dec 17, 2025
  • sysbio.se Public

    The sysbio.se source code

    SysBioChalmers/sysbio.se’s past year of commit activity
    CSS 0 MIT 2 1 0 Updated Dec 9, 2025
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