v3.1.4

Upgrade Vafator to v3.0.0

There were breaking changes in this Vafator release.

v3.1.3

What's Changed

• Update 04_vafator.nf by @LKress in #19
• Update 04_vafator.nf by @ozlemmuslu in #21
• -> bumped vafator version back to 2.2.0

Full Changelog: v3.1.2...v3.1.3

v3.1.2

What's Changed

• Fix conda env issues on Ubuntu by @ozlemmuslu in #18
• Downgrade VAFATOR to version 2.0.3

New Contributors

• @ozlemmuslu made their first contribution in #18

Full Changelog: v3.1.1...v3.1.2

v3.1.1

What's Changed

• Added CI profile and update conda profile by @LKress in #17

New Contributors

• @LKress made their first contribution in #17

Full Changelog: v3.1.0...v3.1.1

v3.1.0

What's Changed

• bump vafator version to v2.2.0 by @priesgo in #14

Full Changelog: v3.0.0...v3.1.0

v3.0.0

Changes

• Introduce WhatsHap for phasing of diploid genotyped VCFs

Bugfix

• Fix BCFtools csq annotation

v2.5.0

Changes

• Bump VAFator version to v2.1.0

Release v2.4.1

Changes

• Add parameter --snpeff_memory to avoid OutOfMemory error in SnpEfff for some samples

Release v2.4.0

Changes

• Add BCFtools csq to perform functional annotations
• Upgrade VAFator to 2.0.3

Release v2.3.1

Bugfix

• Version 2.0.1 of vafator has a bug when providing replicates, upgrading to 2.0.2 fixes it