Add support for Python 3.12#49
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Update scanpy dependency to be versioned correctly
Updated geopandas version constraint to remove upper limit.
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This PR adds support for a more recent Python version, which is needed to work with spatialdata tooling in the Python ecosystem.
It "works-on-my-machine" and can be tested with:
uv run --python 3.12 --with "vpt[all] @ git+https://github.com/bgruening/vizgen-postprocessing.git@py312" vpt --helpHowever, this PR should not be merged as all the other repos would also be updated. I'm using forks and
py312branches for vpt_core, vpt_plugin_cellpose2, vpt_plugin_cellposeandvpt_plugin_watershed.vpt-segmentation-packingis not available more on GitHub, so I vendor'ed this package in - which is sub-optimal.Please let me know if this project is still alive, and you want me to work on this. If not the community has at least something that keeps this project usable for the next 2 years.