This repository contains scripts used to perform a colocalisation analysis using the pericardial fat GWAS and tissue eQTLs from GTEx v8.
If you use any of the code or data from this repository, please cite our
paper. Further, if you use any of the software used within this
repository (e.g. coloc, colochelpR, etc.) please make sure to cite
the software appropriately.
The code in this repository is released under an MIT license. This repository is distributed in the hope that it will be useful to the wider community, but without any warranty of any kind. Please see the LICENSE file for more details.
The workflow and analysis, including utilisation of any scripts, is described in analyse_pericard_fat_gwas_coloc.Rmd.
It can be view interactively at: https://aaronwagen.github.io/pat_gwas_gtex_coloc
Within this repository you will otherwise find:
| Directory | Description |
|---|---|
| docs | Contains all .Rmds and their corresponding .htmls describing analyses performed for this project. |
| logs | For any scripts that were run outside of an .Rmd (e.g. scripts from the scripts directory), a log file was recorded and can be accessed here. |
| manuscript | Figures and tables produced for the manuscript. |
| processed_data | Results from all analyses. |
| scripts | Contains analysis scripts. |