Project-driven simulations: persistent library, runs with provenance, notebook-first analysis#381

Merged

andeplane merged 35 commits into

mainfrom

feat/simulations-library

Jul 12, 2026

Commits on Jul 11, 2026

Add ADRs 001-003: projects/runs model, notebook integration, UI shell

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Revise ADRs after agent review round 1

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Apply verification-pass fixes to ADRs (final documentation round)

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Add project storage layer and worker run-outputs protocol (ADR-001)

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Vendor lammps-js and lammps-logfile wheels into pypi/ for piplite

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Add make jupyter: local JupyterLite build with COI service-worker patch

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CI: build the Jupyter site via make jupyter, after npm install

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Add projects store model and project-run orchestration (ADR-001/002)

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Mark ADRs 001-003 as Accepted

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Add integration tests for the projects store model

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Add theme setting, antd shell bridge, and projects read/size thunks

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Add the projects shell: sidebar, home, library, workspace, run detail (ADR-003)

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Add shell tests: run plans, deep links, formatting, Shell integration

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Fix run records found in browser verification: frame capture, log, memory

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Use hook-based antd notifications in the shell (React 19)

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Fix three defects surfaced by the integration tests

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Add @playwright/test with e2e npm scripts

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Add Playwright e2e suite for the projects shell

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Fix ten confirmed findings from the branch code review

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Expand the New Project example picker into a browsable library

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Restore live analysis in the run detail; collapsible console strip

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Format the picker and run-detail changes with prettier

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Merge origin/main into feat/simulations-library

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Remove legacy non-embed share links; Share now produces embed links only

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Make the Multithreading toggle real: inject the KOKKOS opt-in, fix 4 threads

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Re-vendor the lammps-js wheel at 1.5.1, matching the npm package version

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Add Mixpanel taxonomy and project zip export/import

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Format with prettier

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Remove embedded mode and the legacy shell entirely

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prettierignore: exclude build/tool output that hung CI prettier

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