Applied Systems Biology - HKI Jena, Germany
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- Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI), Jena, Germany
- https://www.leibniz-hki.de/en/applied-systems-biology.html
- @AppSysBio
- thilo.figge@leibniz-hki.de
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DeconvTest
DeconvTest PublicA python-based simulation framework that allows the user to quantify and compare the performance of different deconvolution methods.
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Droplet_segmentation
Droplet_segmentation PublicPython code for the segmentation of microfluidc droplets using OpenCV
Python 2
Repositories
- J2O-Documentation Public
The documentation repository for the J2O plugin containing the writerside project. Changes pushed to this repo will cause the documentation website to update automatically using GitHub actions.
applied-systems-biology/J2O-Documentation’s past year of commit activity - J2O Public
JIPipe 2 OMERO (J2O) is a plugin for OMERO.web that enables the execution of JIPipe workflows on OMERO.servers while using files of the database as inputs.
applied-systems-biology/J2O’s past year of commit activity - Complex-mediated_evasion_systems_biology_approach Public
You will find here all the code related to the systems biology approach used to study the complex-mediated evasion of Candida albicans
applied-systems-biology/Complex-mediated_evasion_systems_biology_approach’s past year of commit activity - OoC-analysis-pipeline Public
JIPipe-based pipeline for quantitative analysis of organ-on-chip imaging data
applied-systems-biology/OoC-analysis-pipeline’s past year of commit activity - ML-psilocybin-prediction Public
AI-Powered Prediction of Psilocybin Production from Microscopy Images of Aspergillus nidulans in Stirred-Tank Reactors
applied-systems-biology/ML-psilocybin-prediction’s past year of commit activity - Beta-sheet-analysis-pipeline Public
This repository contains the JIPipe pipeline used for analyzing β‑sheet fluorescence in microscopy images
applied-systems-biology/Beta-sheet-analysis-pipeline’s past year of commit activity - Froebel_CT_data_analysis Public
applied-systems-biology/Froebel_CT_data_analysis’s past year of commit activity - Alveolar_Sac-hABM Public
Hybrid agent-based model (hABM) framework for simulating early Aspergillus fumigatus infection scenarios in the human alveolar sac
applied-systems-biology/Alveolar_Sac-hABM’s past year of commit activity
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