GSoC Project 2025: Fitting Single Cell Models using L2L and Arbor

Tutorial

Shows basic cell building and introduces a test case with know parametrisation over multiple stimulus protocols.

Setup:

> pip install arbor=0.11 numpy pandas seaborn matplotlib jupyter

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
.gitignore		.gitignore
01_l2l_arbor_prototype.ipynb		01_l2l_arbor_prototype.ipynb
02_l2l_arbor_integration.ipynb		02_l2l_arbor_integration.ipynb
02_membrane_potential_fitting.ipynb		02_membrane_potential_fitting.ipynb
03_high_level_features.ipynb		03_high_level_features.ipynb
LICENSE		LICENSE
README.md		README.md
allen-cell.ipynb		allen-cell.ipynb
single_cell_allen.swc		single_cell_allen.swc
single_cell_allen_fit.json		single_cell_allen_fit.json
single_cell_allen_neuron_ref.csv		single_cell_allen_neuron_ref.csv
utils.py		utils.py