1.7.0 - Caracas

What's Changed

• Increase dev version by @ypriverol in #579
• fixing of bug in msstats_tmt.R (Issue: Error in the msstats_tmt.R function parse_contrasts #577) by @kai-lawsonmcdowall in #578
• Pass correct flag to ProteinQuantifier by @johnne in #581
• fixed rescoring range bugs by @daichengxin in #583
• update pmultiqc version 0.0.36 by @ypriverol in #595
• Support ppm fragment tolerance via alphapeptdeep feature generator by @Copilot in #597
• minor bug change to pmultiqc by @ypriverol in #598
• 🐛 allow editing using nf-core pipelines schema build by setting fa_icon by @enryH in #590
• 🎨 address ifEmpty(null) by @enryH in #600
• Upgrade trfp 1.3.4 -> 1.4.5 by @ypriverol in #601
• Add support for TMT16 and TMT18 correction matrix files by @MaLLLiYA in #599
• Update and clarify SDRF and Json-Parameter parsing by @enryH in #596
• Reduce logo size used in pmultiqc by @yueqixuan in #605
• More linting by @enryH in #602
• some updates related with diann, ptms and pmultiqc small issues by @ypriverol in #614
• update quantms-utils 0.0.24 & pmultiqc 0.0.39 by @ypriverol in #615
• Fix trailing whitespace and code formatting by @Copilot in #618
• Format by @enryH in #603
• bug fix when parameter model_dir is wrongly provided by @ypriverol in #619
• Error of quantms-rescoring process with AWS by @ypriverol in #621
• Add support for .dia file format and improve file format documentation by @Copilot in #623
• Add onsite module by @weizhongchun in #626
• move thermorawfileparser from local to bigbio nf-core by @daichengxin in #627
• update quantms-rescoring to support MS2 transfer learning by @daichengxin in #629
• fixed quantms-rescoring by @daichengxin in #631
• using the bigbio onsite module by @weizhongchun in #630
• Fix some issues in onsite by @weizhongchun in #634
• small changes for release by @ypriverol in #635
• minor changes for release by @ypriverol in #636
• Minor changes by @ypriverol in #637
• Release 1.7.0 - Major changes with quantms-rescoring by @ypriverol in #625

New Contributors

• @kai-lawsonmcdowall made their first contribution in #578
• @johnne made their first contribution in #581
• @MaLLLiYA made their first contribution in #599
• @weizhongchun made their first contribution in #626

Full Changelog: 1.6.0...1.7.0