What's Changed
- Increase dev version by @ypriverol in #579
- fixing of bug in msstats_tmt.R (Issue: Error in the msstats_tmt.R function parse_contrasts #577) by @kai-lawsonmcdowall in #578
- Pass correct flag to ProteinQuantifier by @johnne in #581
- fixed rescoring range bugs by @daichengxin in #583
- update pmultiqc version 0.0.36 by @ypriverol in #595
- Support ppm fragment tolerance via alphapeptdeep feature generator by @Copilot in #597
- minor bug change to pmultiqc by @ypriverol in #598
- 🐛 allow editing using
nf-core pipelines schema buildby setting fa_icon by @enryH in #590 - 🎨 address ifEmpty(null) by @enryH in #600
- Upgrade trfp 1.3.4 -> 1.4.5 by @ypriverol in #601
- Add support for TMT16 and TMT18 correction matrix files by @MaLLLiYA in #599
- Update and clarify SDRF and Json-Parameter parsing by @enryH in #596
- Reduce logo size used in pmultiqc by @yueqixuan in #605
- More linting by @enryH in #602
- some updates related with diann, ptms and pmultiqc small issues by @ypriverol in #614
- update quantms-utils 0.0.24 & pmultiqc 0.0.39 by @ypriverol in #615
- Fix trailing whitespace and code formatting by @Copilot in #618
- Format by @enryH in #603
- bug fix when parameter model_dir is wrongly provided by @ypriverol in #619
- Error of quantms-rescoring process with AWS by @ypriverol in #621
- Add support for .dia file format and improve file format documentation by @Copilot in #623
- Add onsite module by @weizhongchun in #626
- move thermorawfileparser from local to bigbio nf-core by @daichengxin in #627
- update quantms-rescoring to support MS2 transfer learning by @daichengxin in #629
- fixed quantms-rescoring by @daichengxin in #631
- using the bigbio onsite module by @weizhongchun in #630
- Fix some issues in onsite by @weizhongchun in #634
- small changes for release by @ypriverol in #635
- minor changes for release by @ypriverol in #636
- Minor changes by @ypriverol in #637
- Release 1.7.0 - Major changes with quantms-rescoring by @ypriverol in #625
New Contributors
- @kai-lawsonmcdowall made their first contribution in #578
- @johnne made their first contribution in #581
- @MaLLLiYA made their first contribution in #599
- @weizhongchun made their first contribution in #626
Full Changelog: 1.6.0...1.7.0